Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   QL281_RS01925 Genome accession   NZ_CP125292
Coordinates   348817..350307 (-) Length   496 a.a.
NCBI ID   WP_017695904.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117797     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 343817..355307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QL281_RS01895 (QL281_01895) gudB 343965..345239 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  QL281_RS01900 (QL281_01900) mecB 345385..345969 (-) 585 WP_017695900.1 genetic competence negative regulator -
  QL281_RS01905 (QL281_01905) ypbG 346128..346907 (-) 780 WP_144459171.1 metallophosphoesterase -
  QL281_RS01910 (QL281_01910) ypbF 346994..347437 (-) 444 WP_043857735.1 YpbF family protein -
  QL281_RS01915 (QL281_01915) ypbE 347500..348237 (-) 738 WP_017695902.1 LysM peptidoglycan-binding domain-containing protein -
  QL281_RS01920 (QL281_01920) ypbD 348188..348790 (-) 603 WP_017695903.1 CPBP family intramembrane glutamic endopeptidase -
  QL281_RS01925 (QL281_01925) recS 348817..350307 (-) 1491 WP_017695904.1 ATP-dependent DNA helicase RecQ Machinery gene
  QL281_RS01930 (QL281_01930) gmmB 350300..351358 (-) 1059 WP_017695905.1 helix-turn-helix domain-containing protein -
  QL281_RS01935 (QL281_01935) fer 351624..351872 (+) 249 WP_003225461.1 ferredoxin -
  QL281_RS01940 (QL281_01940) fmnP 351912..352484 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  QL281_RS01945 (QL281_01945) serA 352980..354557 (+) 1578 WP_038429220.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56535.08 Da        Isoelectric Point: 6.3928

>NTDB_id=762206 QL281_RS01925 WP_017695904.1 348817..350307(-) (recS) [Bacillus subtilis strain SRCM117797]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMYRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=762206 QL281_RS01925 WP_017695904.1 348817..350307(-) (recS) [Bacillus subtilis strain SRCM117797]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCAACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGTACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996