Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OXA88_RS04685 Genome accession   NZ_CP113436
Coordinates   1034793..1035341 (+) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC021     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1029793..1040341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA88_RS04675 (OXA88_04675) ravI 1032298..1033308 (-) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -
  OXA88_RS04680 (OXA88_04680) pilM 1033725..1034789 (+) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  OXA88_RS04685 (OXA88_04685) pilN 1034793..1035341 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  OXA88_RS04690 (OXA88_04690) pilO 1035355..1035954 (+) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  OXA88_RS04695 (OXA88_04695) pilP 1035951..1036538 (+) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  OXA88_RS04700 (OXA88_04700) pilQ 1036542..1038638 (+) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  OXA88_RS04705 (OXA88_04705) aroK 1039084..1039611 (+) 528 WP_010946667.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=762102 OXA88_RS04685 WP_010946663.1 1034793..1035341(+) (pilN) [Legionella pneumophila strain PATHC021]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=762102 OXA88_RS04685 WP_010946663.1 1034793..1035341(+) (pilN) [Legionella pneumophila strain PATHC021]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGAATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTTTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTAGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995