Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   G6L16_RS00990 Genome accession   NZ_CP124963
Coordinates   188896..189261 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain AF1/95     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 183896..194261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G6L16_RS00975 (G6L16_000975) - 186111..186488 (-) 378 WP_174002313.1 hypothetical protein -
  G6L16_RS00980 (G6L16_000980) - 187005..188600 (+) 1596 WP_236772331.1 globin-coupled sensor protein -
  G6L16_RS00985 (G6L16_000985) - 188600..188899 (+) 300 WP_013635450.1 STAS domain-containing protein -
  G6L16_RS00990 (G6L16_000990) scnR 188896..189261 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  G6L16_RS00995 (G6L16_000995) - 189278..191545 (+) 2268 WP_174001379.1 chemotaxis protein CheA -
  G6L16_RS01000 (G6L16_001000) cheR 191559..192467 (+) 909 WP_019564320.1 protein-glutamate O-methyltransferase CheR -
  G6L16_RS01005 (G6L16_001005) cheB 192464..193519 (+) 1056 WP_174001380.1 protein-glutamate O-methylesterase CheB -
  G6L16_RS01010 (G6L16_001010) cheY2 193519..193908 (+) 390 WP_003515008.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=761704 G6L16_RS00990 WP_003493773.1 188896..189261(+) (scnR) [Agrobacterium tumefaciens strain AF1/95]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=761704 G6L16_RS00990 WP_003493773.1 188896..189261(+) (scnR) [Agrobacterium tumefaciens strain AF1/95]
GTGAAGAAAAAAGTTCTTACCGTGGATGATTCCAGAACGATCAGGAACATGCTCCTGGTCACGCTCAACAATGCCGGTTT
CGAGACAATTCAGGCCGAAGACGGCATTGAGGGTCTCGAAGTGCTGGAGCAGAGCAACCCCGACGTCATCGTGACCGATA
TCAACATGCCCCGTCTTGACGGTTTCGGCTTCATCGAGGGTGTGCGTCGCAACGAGAAGTACCGGGCCATACCGATCCTC
GTTCTGACGACCGAAAGCGACGCAGAGAAGAAGAACCGCGCCCGTCAGGCCGGTGCGACCGGCTGGATCGTCAAGCCGTT
CGATCCTGCGAAGCTCATCGATGCCATTGAACGCGTAACTGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364