Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   OSV60_RS10230 Genome accession   NZ_CP113077
Coordinates   2149972..2150352 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 86II/2C     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2144972..2155352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV60_RS10200 (OSV60_10200) tadA 2145090..2145594 (-) 505 Protein_1983 tRNA adenosine(34) deaminase TadA -
  OSV60_RS10205 (OSV60_10205) - 2145601..2146725 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  OSV60_RS10210 (OSV60_10210) ung 2146722..2147435 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  OSV60_RS10215 (OSV60_10215) - 2147486..2148082 (-) 597 WP_000908452.1 6-pyruvoyl trahydropterin synthase family protein -
  OSV60_RS10220 (OSV60_10220) gspK 2148312..2149271 (-) 960 WP_000301460.1 type II secretion system minor pseudopilin GspK -
  OSV60_RS10225 (OSV60_10225) xcpW 2149271..2149972 (-) 702 WP_000594589.1 type II secretion system minor pseudopilin GspJ Machinery gene
  OSV60_RS10230 (OSV60_10230) xcpV 2149972..2150352 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  OSV60_RS10235 (OSV60_10235) - 2150342..2150896 (-) 555 WP_000841373.1 type II secretion system protein -
  OSV60_RS10240 (OSV60_10240) - 2150906..2151514 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  OSV60_RS10245 (OSV60_10245) - 2151552..2152325 (-) 774 WP_000497298.1 TatD family hydrolase -
  OSV60_RS10250 (OSV60_10250) - 2152343..2152684 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  OSV60_RS10255 (OSV60_10255) - 2152696..2153676 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  OSV60_RS10260 (OSV60_10260) kdsB 2153688..2154449 (-) 762 WP_000680702.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=759964 OSV60_RS10230 WP_000836911.1 2149972..2150352(-) (xcpV) [Acinetobacter baumannii strain 86II/2C]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=759964 OSV60_RS10230 WP_000836911.1 2149972..2150352(-) (xcpV) [Acinetobacter baumannii strain 86II/2C]
ATGAAATCTAAAGGTTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACTAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1