Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   P7I92_RS27185 Genome accession   NZ_CP124654
Coordinates   5850691..5851215 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 2021CK-01851     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5845691..5856215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I92_RS27170 (P7I92_27170) aroB 5846807..5847913 (-) 1107 WP_003112148.1 3-dehydroquinate synthase -
  P7I92_RS27175 (P7I92_27175) aroK 5847963..5848481 (-) 519 WP_003095833.1 shikimate kinase AroK -
  P7I92_RS27180 (P7I92_27180) pilQ 5848493..5850637 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  P7I92_RS27185 (P7I92_27185) comL/pilP 5850691..5851215 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  P7I92_RS27190 (P7I92_27190) pilO 5851212..5851835 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  P7I92_RS27195 (P7I92_27195) pilN 5851832..5852428 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  P7I92_RS27200 (P7I92_27200) pilM 5852428..5853492 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  P7I92_RS27205 (P7I92_27205) - 5853677..5856148 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=759895 P7I92_RS27185 WP_003095836.1 5850691..5851215(-) (comL/pilP) [Pseudomonas aeruginosa strain 2021CK-01851]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=759895 P7I92_RS27185 WP_003095836.1 5850691..5851215(-) (comL/pilP) [Pseudomonas aeruginosa strain 2021CK-01851]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362