Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OQE50_RS22755 Genome accession   NZ_CP110873
Coordinates   4690898..4692418 (+) Length   506 a.a.
NCBI ID   WP_248188446.1    Uniprot ID   -
Organism   Enterobacter kobei strain SCLZS19     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4685898..4697418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQE50_RS22735 (OQE50_22735) ilvE 4687464..4688393 (-) 930 WP_014885677.1 branched-chain-amino-acid transaminase -
  OQE50_RS22740 (OQE50_22740) ilvM 4688412..4688675 (-) 264 WP_003860184.1 acetolactate synthase 2 small subunit -
  OQE50_RS22745 (OQE50_22745) ilvG 4688672..4690318 (-) 1647 WP_023331588.1 acetolactate synthase 2 catalytic subunit -
  OQE50_RS22750 (OQE50_22750) ilvL 4690458..4690556 (-) 99 WP_001311244.1 ilv operon leader peptide -
  OQE50_RS22755 (OQE50_22755) comM 4690898..4692418 (+) 1521 WP_248188446.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OQE50_RS22760 (OQE50_22760) - 4692448..4692786 (-) 339 WP_014885680.1 DUF413 domain-containing protein -
  OQE50_RS22765 (OQE50_22765) hdfR 4692905..4693726 (+) 822 WP_045269185.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55072.16 Da        Isoelectric Point: 7.2807

>NTDB_id=756783 OQE50_RS22755 WP_248188446.1 4690898..4692418(+) (comM) [Enterobacter kobei strain SCLZS19]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLVAGHL
QEVCAWLEGRHELSEPEECDNVIADTPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLISSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIQISRTRAKIIYPAQFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGLLRQKGITG
ESSADVRERVIAAQTRQYARQNRLNARLDNAGIRQFCSLNMEDAVWLEETLTRFGLSIRAWQRLLKVARTIADVEGCSDI
QRKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=756783 OQE50_RS22755 WP_248188446.1 4690898..4692418(+) (comM) [Enterobacter kobei strain SCLZS19]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTGAAGGCACCGCTTATTTCTGTAGAGGTTCATCTGAGTAA
TGGGCTACCCGGGCTCACGCTCGTCGGGCTACCTGAAACGACGGTTAAAGAAGCCCGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCGAAGAAGATCACCATCAACCTGGCTCCCGCCGATCTGCCCAAAGAGGGGGGACGA
TATGATTTACCTATCGCGATTGCGCTTCTCGCGGCCTCTGAGCAGCTTAATACGACCAGGCTAGGCTCGTACGAGTTTGT
GGGAGAACTCGCGCTCACAGGCGCGTTAAGGGGCGTTCCCGGTGCGATATCGGGCGCGCTGGAAGCTATACGCGCAGGGC
GGCAAATCATTGTCGCGAATGAAAATGCATCAGAAGTGAGCCTTATCGCCGAGAAGGGGTGTCTTGTCGCAGGGCATTTA
CAGGAAGTTTGCGCCTGGCTGGAAGGGCGCCATGAACTGTCCGAGCCGGAAGAGTGTGACAATGTTATAGCCGATACCCC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATTACGGCCGCAGGTGGACACAATCTTC
TGTTGATTGGCCCGCCTGGTACGGGTAAAACGATGCTGGCGAGCAGGCTGAGTGGCTTGCTGCCACCGCTCAATAATCAT
GAAGCGCTGGAAAGTGCCGCCATTTATAGCCTTATCAGTTCTACCTCGTTGCAAAAACAGTGGCGCCGTCGCCCTTTTCG
TTCACCTCATCATAGTGCTTCACTGACGGCGATGGTCGGCGGTGGGTCTATTCCCGGGCCGGGTGAAATTTCACTGGCGC
ACAATGGCATTCTGTTTCTCGACGAGCTGCCTGAGTTTGAGCGCCGCGTCCTGGATGCCCTGAGAGAACCCATTGAATCT
GGAGAGATACAAATCTCACGCACGCGAGCCAAAATAATCTATCCCGCGCAGTTTCAGCTGGTCGCTGCGATGAATCCCAG
CCCTACGGGTCATTATCAGGGCAATCATAACCGCTGTACGCCAGAGCAGACGTTGCGCTATCTGGGAAAGTTATCCGGCC
CGTTCCTCGACCGTTTCGATTTATCCCTCGAAATCCCCCTTCCCCCGCCGGGCCTGCTCAGGCAAAAAGGCATCACGGGT
GAAAGCTCAGCAGATGTACGCGAGCGGGTCATTGCTGCCCAGACGCGACAATATGCCCGTCAGAACAGGCTGAATGCGCG
GCTGGATAATGCCGGGATCCGGCAGTTTTGTTCTCTTAACATGGAGGATGCGGTTTGGCTGGAGGAAACCTTGACGCGTT
TTGGTCTTTCTATACGCGCGTGGCAGCGTTTGCTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGTTGTAGTGACATT
CAGAGGAAACACTTGCAGGAGGCGCTGAGCTACCGCGCTATCGATCGTTTGCTGCTCCATCTGCAGAAGTTGCTGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio cholerae strain A1552

58.648

99.407

0.583
  comM Glaesserella parasuis strain SC1401

58.185

100

0.583
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.181

100

0.443