Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   BBP27_RS05870 Genome accession   NZ_CP110721
Coordinates   1225830..1226291 (+) Length   153 a.a.
NCBI ID   WP_003745830.1    Uniprot ID   -
Organism   Neisseria sp. RH3002v2g     
Function   inhibition of RecA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1220830..1231291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP27_RS05845 - 1220931..1221599 (-) 669 WP_049352170.1 DUF3108 domain-containing protein -
  BBP27_RS05850 purN 1221630..1222256 (-) 627 WP_128582831.1 phosphoribosylglycinamide formyltransferase -
  BBP27_RS05855 - 1222354..1223172 (-) 819 WP_003745836.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  BBP27_RS05860 - 1223333..1224598 (-) 1266 WP_188211473.1 Glu/Leu/Phe/Val dehydrogenase -
  BBP27_RS05865 - 1225020..1225733 (+) 714 WP_188211472.1 phosphoglycolate phosphatase -
  BBP27_RS05870 recX 1225830..1226291 (+) 462 WP_003745830.1 recombination regulator RecX Regulator
  BBP27_RS05875 - 1226367..1226528 (+) 162 WP_003745829.1 hypothetical protein -
  BBP27_RS05880 - 1226646..1228802 (-) 2157 WP_188211471.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  BBP27_RS05885 rpoZ 1228909..1229115 (-) 207 WP_003682294.1 DNA-directed RNA polymerase subunit omega -
  BBP27_RS05890 gmk 1229168..1229785 (-) 618 WP_003745825.1 guanylate kinase -
  BBP27_RS05895 - 1229954..1230514 (+) 561 WP_003745823.1 adenine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17914.11 Da        Isoelectric Point: 6.4984

>NTDB_id=756001 BBP27_RS05870 WP_003745830.1 1225830..1226291(+) (recX) [Neisseria sp. RH3002v2g]
MRPPKTLRARALDILSRQEVSRVGLKRKLAPHAESEEELEKVLDEFAERNWQSDQRYAEAYIHSKSNRYGTLRLKQALAQ
QGIDADDCRELLPDREDELQTAISVLRKKFKQEAEDLKEKQKQARFLAYRGFGADTIQTALKTAWNEEEDFYQ

Nucleotide


Download         Length: 462 bp        

>NTDB_id=756001 BBP27_RS05870 WP_003745830.1 1225830..1226291(+) (recX) [Neisseria sp. RH3002v2g]
ATGAGACCCCCTAAAACCTTACGTGCCCGCGCCTTGGATATTCTTTCCCGTCAAGAAGTCAGCCGCGTCGGTTTGAAACG
CAAACTGGCTCCGCACGCTGAAAGCGAAGAAGAATTGGAAAAGGTTTTGGACGAATTCGCCGAACGAAATTGGCAATCCG
ACCAACGTTACGCTGAAGCCTATATTCACAGCAAGAGTAACCGTTACGGCACGCTCCGCCTCAAACAAGCCTTGGCTCAA
CAAGGTATTGATGCGGATGACTGTCGGGAATTACTACCCGACAGGGAGGACGAGCTGCAAACCGCCATTTCTGTTTTGCG
TAAAAAATTCAAGCAAGAAGCTGAAGATTTGAAAGAAAAACAAAAACAAGCGCGTTTCCTTGCGTATCGCGGCTTTGGTG
CAGACACCATTCAGACGGCCTTAAAAACCGCATGGAATGAAGAAGAAGACTTCTATCAATAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(30-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

78.912

96.078

0.758