Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   OKW95_RS17945 Genome accession   NZ_CP110254
Coordinates   3809533..3809859 (-) Length   108 a.a.
NCBI ID   WP_002053185.1    Uniprot ID   A0A0A7XV72
Organism   Acinetobacter oleivorans strain S4     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3804533..3814859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW95_RS17925 (OKW95_17930) - 3804648..3805265 (-) 618 WP_323739774.1 FHA domain-containing protein -
  OKW95_RS17930 (OKW95_17935) gspD 3805306..3807579 (-) 2274 WP_013199109.1 type II secretion system secretin GspD -
  OKW95_RS17935 (OKW95_17940) - 3807621..3808457 (-) 837 WP_013199110.1 type II secretion system protein N -
  OKW95_RS17940 (OKW95_17945) gspN 3808457..3809200 (-) 744 WP_005301710.1 type II secretion system protein N -
  OKW95_RS17945 (OKW95_17950) hns 3809533..3809859 (-) 327 WP_002053185.1 H-NS family nucleoid-associated regulatory protein Regulator
  OKW95_RS17950 (OKW95_17955) - 3810054..3810494 (-) 441 WP_023274336.1 acyl-CoA thioesterase -
  OKW95_RS17955 (OKW95_17960) - 3810502..3811695 (-) 1194 WP_005301703.1 hypothetical protein -
  OKW95_RS17960 (OKW95_17965) - 3811705..3812547 (-) 843 WP_323739775.1 hypothetical protein -
  OKW95_RS17965 (OKW95_17970) - 3812556..3813323 (-) 768 WP_199945664.1 uroporphyrinogen-III synthase -
  OKW95_RS17970 (OKW95_17975) hemC 3813327..3814244 (-) 918 WP_199945665.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12478.12 Da        Isoelectric Point: 5.0524

>NTDB_id=753398 OKW95_RS17945 WP_002053185.1 3809533..3809859(-) (hns) [Acinetobacter oleivorans strain S4]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNSE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=753398 OKW95_RS17945 WP_002053185.1 3809533..3809859(-) (hns) [Acinetobacter oleivorans strain S4]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCGGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTTGAGCCACGTTACCGCAACAAAAACAATTCTGAA
GAGACTTGGACTGGTCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A7XV72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991