Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OKW95_RS16005 Genome accession   NZ_CP110254
Coordinates   3410448..3410852 (-) Length   134 a.a.
NCBI ID   WP_192834188.1    Uniprot ID   A0AAJ1PDR8
Organism   Acinetobacter oleivorans strain S4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3405448..3415852
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW95_RS15975 (OKW95_15980) - 3405530..3405799 (-) 270 WP_013198928.1 HPr family phosphocarrier protein -
  OKW95_RS15980 (OKW95_15985) rapZ 3405796..3406647 (-) 852 WP_004794551.1 RNase adapter RapZ -
  OKW95_RS15985 (OKW95_15990) panC 3406672..3407520 (-) 849 WP_323739734.1 pantoate--beta-alanine ligase -
  OKW95_RS15990 (OKW95_15995) panB 3407524..3408333 (-) 810 WP_004794557.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  OKW95_RS15995 (OKW95_16000) folK 3408380..3408862 (-) 483 WP_004794560.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  OKW95_RS16000 (OKW95_16005) pcnB 3408859..3410322 (-) 1464 WP_267531106.1 polynucleotide adenylyltransferase PcnB -
  OKW95_RS16005 (OKW95_16010) comEA 3410448..3410852 (-) 405 WP_192834188.1 ComEA family DNA-binding protein Machinery gene
  OKW95_RS16010 (OKW95_16015) mazG 3410821..3411627 (-) 807 WP_013198933.1 nucleoside triphosphate pyrophosphohydrolase -
  OKW95_RS16015 (OKW95_16020) - 3411740..3412513 (+) 774 WP_151989387.1 SDR family oxidoreductase -
  OKW95_RS16020 (OKW95_16025) - 3412561..3414867 (-) 2307 WP_005302395.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15299.56 Da        Isoelectric Point: 10.4153

>NTDB_id=753389 OKW95_RS16005 WP_192834188.1 3410448..3410852(-) (comEA) [Acinetobacter oleivorans strain S4]
MHLSMNLWKSKSYIFIVLFWSLISSTFVQAQSFDQNFKEWKAKQQMYDQKLSMQHASHSSAPKSSAMTDSSGQVHLNQAN
IDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKARLTL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=753389 OKW95_RS16005 WP_192834188.1 3410448..3410852(-) (comEA) [Acinetobacter oleivorans strain S4]
ATGCATCTCAGCATGAATCTTTGGAAGAGTAAGTCTTATATTTTTATTGTTTTATTTTGGAGTCTGATTTCTTCAACCTT
CGTTCAGGCTCAATCTTTTGATCAAAATTTTAAGGAGTGGAAGGCTAAACAGCAGATGTATGATCAGAAGTTGAGCATGC
AACACGCCTCTCATTCTAGTGCTCCAAAAAGCTCAGCCATGACTGACTCTTCGGGACAGGTTCACTTGAATCAAGCCAAT
ATTGATGAGCTTCAAAAGCTAAAAGGTATTGGCGAGAAAAAGGCTCAAGCGATTGTAGAATACCGTCAAAAGAATGGTGG
CTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGTATTGGTCCAGCCATTTTTGAAAAGAATAAAGCACGTTTGACTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

67.153

100

0.687
  comEA Acinetobacter baumannii D1279779

65.693

100

0.672
  comEA Acinetobacter baylyi ADP1

43.548

92.537

0.403