Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   QFX50_RS09575 Genome accession   NZ_CP123740
Coordinates   1946342..1947115 (+) Length   257 a.a.
NCBI ID   WP_304984500.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 2.3b     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1941342..1952115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFX50_RS09555 trmFO 1941686..1942993 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  QFX50_RS09560 xerC 1943410..1944306 (+) 897 WP_001015597.1 tyrosine recombinase XerC -
  QFX50_RS09565 hslV 1944303..1944848 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  QFX50_RS09570 hslU 1944914..1946317 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  QFX50_RS09575 codY 1946342..1947115 (+) 774 WP_304984500.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  QFX50_RS09580 - 1947166..1947258 (+) 93 WP_001790530.1 hypothetical protein -
  QFX50_RS09585 rpsB 1947457..1948224 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  QFX50_RS09590 - 1948258..1948371 (+) 114 WP_001789890.1 hypothetical protein -
  QFX50_RS09595 tsf 1948406..1949287 (+) 882 WP_000201387.1 translation elongation factor Ts -
  QFX50_RS09600 pyrH 1949424..1950146 (+) 723 WP_000057330.1 UMP kinase -
  QFX50_RS09605 frr 1950165..1950719 (+) 555 WP_001280004.1 ribosome recycling factor -
  QFX50_RS09610 - 1951092..1951862 (+) 771 WP_000473699.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28741.06 Da        Isoelectric Point: 5.7568

>NTDB_id=751728 QFX50_RS09575 WP_304984500.1 1946342..1947115(+) (codY) [Staphylococcus aureus strain 2.3b]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKENFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=751728 QFX50_RS09575 WP_304984500.1 1946342..1947115(+) (codY) [Staphylococcus aureus strain 2.3b]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACTATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTATTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGGGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTAGGCGGTACGGAAGGTCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAATTTCTTAGATGAATTAGAAAAAAGTAAATAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

63.813

100

0.638
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428