Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QEN54_RS14770 Genome accession   NZ_CP123036
Coordinates   3035199..3035828 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain E22     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3030199..3040828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QEN54_RS14755 helD 3030441..3032495 (-) 2055 WP_000420536.1 DNA helicase IV -
  QEN54_RS14760 yccF 3032618..3033064 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QEN54_RS14765 yccS 3033074..3035236 (+) 2163 WP_000875023.1 YccS family putative transporter -
  QEN54_RS14770 sxy/tfoX 3035199..3035828 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QEN54_RS14775 sulA 3036047..3036556 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QEN54_RS14780 ompA 3036913..3037965 (+) 1053 WP_001361736.1 porin OmpA -
  QEN54_RS14785 matP 3038041..3038493 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QEN54_RS14790 ycbZ 3038679..3040439 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=745239 QEN54_RS14770 WP_000839153.1 3035199..3035828(-) (sxy/tfoX) [Escherichia coli strain E22]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=745239 QEN54_RS14770 WP_000839153.1 3035199..3035828(-) (sxy/tfoX) [Escherichia coli strain E22]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1