Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CFBP5506_RS00745 Genome accession   NZ_CP122962
Coordinates   154698..155063 (+) Length   121 a.a.
NCBI ID   WP_003493773.1    Uniprot ID   A0A1S9E560
Organism   Agrobacterium tumefaciens strain CFBP5506     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 149698..160063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFBP5506_RS00730 (CFBP5506_00730) - 151913..152290 (-) 378 WP_080791405.1 hypothetical protein -
  CFBP5506_RS00735 (CFBP5506_00735) - 152858..154402 (+) 1545 WP_080791404.1 globin-coupled sensor protein -
  CFBP5506_RS00740 (CFBP5506_00740) - 154402..154701 (+) 300 WP_077985403.1 STAS domain-containing protein -
  CFBP5506_RS00745 (CFBP5506_00745) scnR 154698..155063 (+) 366 WP_003493773.1 chemotaxis response regulator CheY1 Regulator
  CFBP5506_RS00750 (CFBP5506_00750) - 155080..157347 (+) 2268 WP_080791403.1 chemotaxis protein CheA -
  CFBP5506_RS00755 (CFBP5506_00755) cheR 157361..158269 (+) 909 WP_080791402.1 protein-glutamate O-methyltransferase CheR -
  CFBP5506_RS00760 (CFBP5506_00760) cheB 158266..159321 (+) 1056 WP_080791401.1 protein-glutamate O-methylesterase CheB -
  CFBP5506_RS00765 (CFBP5506_00765) cheY2 159321..159710 (+) 390 WP_003503467.1 chemotaxis response regulator CheY2 -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13482.48 Da        Isoelectric Point: 4.9534

>NTDB_id=744675 CFBP5506_RS00745 WP_003493773.1 154698..155063(+) (scnR) [Agrobacterium tumefaciens strain CFBP5506]
MKKKVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFGFIEGVRRNEKYRAIPIL
VLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERVTA

Nucleotide


Download         Length: 366 bp        

>NTDB_id=744675 CFBP5506_RS00745 WP_003493773.1 154698..155063(+) (scnR) [Agrobacterium tumefaciens strain CFBP5506]
GTGAAGAAAAAAGTTCTTACCGTGGATGATTCCCGGACGATCAGGAACATGCTCCTGGTCACCCTCAACAATGCCGGTTT
CGAAACCATTCAGGCTGAAGACGGCATTGAGGGTCTCGAAGTGCTCGAGCAGAGCAACCCGGATGTTATCGTGACGGACA
TCAATATGCCCCGTCTGGATGGTTTCGGCTTCATCGAGGGTGTGCGTCGCAACGAAAAGTATCGTGCGATCCCGATCCTC
GTCCTGACGACCGAAAGCGACGCTGAGAAAAAGAACCGCGCCCGTCAGGCCGGTGCGACGGGCTGGATCGTCAAGCCGTT
CGACCCCGCGAAACTCATCGATGCCATTGAACGCGTAACCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1S9E560

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

39.286

92.562

0.364