Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QBD03_RS07225 Genome accession   NZ_CP122959
Coordinates   1476751..1477203 (-) Length   150 a.a.
NCBI ID   WP_035145016.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1471751..1482203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS07185 (QBD03_07185) - 1471898..1472263 (+) 366 WP_011374991.1 DUF805 domain-containing protein -
  QBD03_RS07195 (QBD03_07195) - 1472806..1473264 (-) 459 WP_025016390.1 hypothetical protein -
  QBD03_RS07200 (QBD03_07200) - 1473319..1474515 (-) 1197 WP_011374993.1 acetate kinase -
  QBD03_RS07205 (QBD03_07205) - 1474537..1475556 (-) 1020 WP_280102608.1 class I SAM-dependent methyltransferase -
  QBD03_RS07210 (QBD03_07210) - 1475671..1475937 (-) 267 WP_143455065.1 hypothetical protein -
  QBD03_RS07215 (QBD03_07215) comGF 1475972..1476484 (-) 513 WP_280102609.1 competence type IV pilus minor pilin ComGF Machinery gene
  QBD03_RS07220 (QBD03_07220) comGE 1476459..1476764 (-) 306 WP_280102610.1 hypothetical protein Machinery gene
  QBD03_RS07225 (QBD03_07225) comGD 1476751..1477203 (-) 453 WP_035145016.1 competence type IV pilus minor pilin ComGD Machinery gene
  QBD03_RS07230 (QBD03_07230) comGC 1477175..1477438 (-) 264 WP_280102611.1 competence protein ComGC Machinery gene
  QBD03_RS07235 (QBD03_07235) - 1477492..1477893 (+) 402 WP_280102612.1 hypothetical protein -
  QBD03_RS07240 (QBD03_07240) - 1477919..1478092 (+) 174 WP_280102613.1 hypothetical protein -
  QBD03_RS07245 (QBD03_07245) - 1478240..1479049 (-) 810 WP_280102614.1 N-acetylmuramoyl-L-alanine amidase -
  QBD03_RS07250 (QBD03_07250) - 1479049..1479327 (-) 279 WP_099769399.1 lysis protein -
  QBD03_RS07255 (QBD03_07255) - 1479324..1479797 (-) 474 WP_099769398.1 phage holin family protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17475.36 Da        Isoelectric Point: 10.2279

>NTDB_id=744654 QBD03_RS07225 WP_035145016.1 1476751..1477203(-) (comGD) [Latilactobacillus sakei strain HUP1]
MKAARLSKNEGFTLIEMCVVLAIVSLLSWLPIYQIKQYRAQQAEQLFLHQFETSWDAARQYVAIEPRAVRVMWDAPTHTI
TFKGAGESFRNHQLVLPETLTVSNPAEWHLINITHNKGIKPRTLKLKSTLNNREYQYKVQMMWGVLHVQK

Nucleotide


Download         Length: 453 bp        

>NTDB_id=744654 QBD03_RS07225 WP_035145016.1 1476751..1477203(-) (comGD) [Latilactobacillus sakei strain HUP1]
TTGAAGGCGGCACGGTTAAGCAAAAATGAAGGTTTTACGTTGATTGAAATGTGCGTGGTCTTAGCGATTGTGAGCTTATT
AAGCTGGTTGCCGATTTATCAGATTAAGCAATATCGTGCGCAACAGGCTGAGCAGTTGTTTCTACATCAATTTGAAACGA
GTTGGGATGCAGCTCGTCAATATGTGGCAATTGAACCGCGTGCCGTCCGTGTGATGTGGGATGCACCAACACATACGATC
ACATTTAAAGGTGCTGGTGAGTCATTTAGAAATCATCAACTCGTATTACCAGAAACTTTAACAGTGAGTAATCCAGCCGA
ATGGCATTTAATTAATATTACTCATAATAAGGGTATTAAACCGCGCACCTTAAAGTTAAAATCAACGCTTAATAATCGTG
AATATCAGTATAAAGTCCAGATGATGTGGGGGGTATTACATGTTCAGAAGTAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Latilactobacillus sakei subsp. sakei 23K

99.333

100

0.993