Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   QBD03_RS05925 Genome accession   NZ_CP122959
Coordinates   1221055..1222500 (-) Length   481 a.a.
NCBI ID   WP_280102532.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1216055..1227500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS05900 (QBD03_05900) - 1216221..1216496 (-) 276 WP_011374717.1 HU family DNA-binding protein -
  QBD03_RS05905 (QBD03_05905) der 1216703..1218013 (-) 1311 WP_016265173.1 ribosome biogenesis GTPase Der -
  QBD03_RS05910 (QBD03_05910) rpsA 1218247..1219458 (-) 1212 WP_025015758.1 30S ribosomal protein S1 -
  QBD03_RS05915 (QBD03_05915) cmk 1219553..1220212 (-) 660 WP_280102530.1 (d)CMP kinase -
  QBD03_RS05920 (QBD03_05920) - 1220279..1220986 (-) 708 WP_280102531.1 LysM domain-containing protein -
  QBD03_RS05925 (QBD03_05925) recS 1221055..1222500 (-) 1446 WP_280102532.1 RecQ family ATP-dependent DNA helicase Machinery gene
  QBD03_RS05930 (QBD03_05930) - 1222497..1223525 (-) 1029 WP_280102533.1 helix-turn-helix domain-containing protein -
  QBD03_RS05935 (QBD03_05935) - 1223562..1223792 (+) 231 WP_016265179.1 ferredoxin -
  QBD03_RS05940 (QBD03_05940) - 1223870..1224445 (-) 576 WP_056946643.1 ECF transporter S component -
  QBD03_RS05945 (QBD03_05945) - 1224761..1225531 (-) 771 WP_011374726.1 pseudouridine synthase -
  QBD03_RS05950 (QBD03_05950) scpB 1225534..1226157 (-) 624 WP_076645129.1 SMC-Scp complex subunit ScpB -
  QBD03_RS05955 (QBD03_05955) - 1226141..1226896 (-) 756 WP_025015753.1 segregation/condensation protein A -
  QBD03_RS05960 (QBD03_05960) - 1226905..1227273 (-) 369 WP_025015752.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 54549.32 Da        Isoelectric Point: 5.1470

>NTDB_id=744633 QBD03_RS05925 WP_280102532.1 1221055..1222500(-) (recS) [Latilactobacillus sakei strain HUP1]
MTSEELIYDQLAQHFGYSTFKPGQLAVIQSVLAGQETLAVLPTGTGKSLCYQLPAYILGHTTVIVSPLIALMQDQVAQLN
YQGEKRAVAINSNLVPQQKYQLLTHLADYRFIFMAPETISQPEVIQALQRCQIDLFVVDEAHCISQWGIDFRPDYLVLAA
IKAQLQPTATLALTATANDRVRQDILNKLALKNAAQIMTSVDRPNIYLGVSQQPDEQAKNQFLANLVQKSQGPGIIYFSS
RQKTMEIAAFLQQETDLKIAYYHAALSTQERYLIQQQFMQGQLDLICTTNAFGMGINKADIRYVIHYHLPQNIESYLQEI
GRAGRDGQPAYALVLTTPQDLYLQQSLVSFGIPEPGLIRRYYQEPQLFKQSQGNEFELLRRYQQLGMTEEEVIKLLDNRQ
TEKQFSLQTMLDYLTLKGCRRQFIVNYFDQAPKTIEHSETCCGEQDSTDFLAQLNLEQAINYKTAETVVLTGWTGILDQL
F

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=744633 QBD03_RS05925 WP_280102532.1 1221055..1222500(-) (recS) [Latilactobacillus sakei strain HUP1]
ATGACTTCTGAAGAACTCATTTATGACCAGTTAGCGCAGCACTTTGGCTATTCAACCTTTAAACCGGGCCAGTTAGCGGT
TATTCAGTCGGTACTTGCTGGGCAGGAGACATTAGCCGTTTTACCAACTGGGACCGGGAAATCGCTGTGTTATCAATTAC
CGGCCTATATCTTGGGGCATACGACTGTGATTGTCTCGCCACTAATCGCATTAATGCAAGATCAGGTAGCCCAATTGAAT
TATCAAGGGGAAAAACGAGCTGTCGCCATTAATTCTAATTTAGTGCCTCAGCAAAAATACCAGTTACTGACGCATTTAGC
GGATTACCGCTTTATTTTTATGGCACCGGAGACTATCAGTCAACCAGAAGTGATTCAGGCGCTTCAACGTTGTCAAATCG
ATTTGTTTGTGGTTGATGAGGCCCATTGTATTTCACAGTGGGGAATTGACTTTAGACCGGACTATTTAGTTTTAGCAGCC
ATCAAGGCCCAATTACAGCCAACTGCAACACTGGCTTTGACGGCGACTGCCAATGATCGTGTACGCCAAGATATTTTGAA
TAAATTGGCGTTAAAAAACGCGGCCCAAATCATGACCTCTGTTGATCGCCCCAATATCTATTTGGGCGTGAGCCAACAAC
CTGATGAACAAGCGAAGAACCAATTTTTAGCCAACTTAGTGCAAAAAAGCCAGGGTCCCGGGATTATTTATTTTTCAAGT
CGGCAAAAGACGATGGAGATTGCGGCCTTTTTGCAGCAAGAAACTGATCTGAAGATTGCGTATTACCACGCGGCGTTATC
AACCCAGGAGCGGTATTTGATTCAACAACAATTTATGCAAGGGCAACTTGATTTGATTTGTACAACCAATGCTTTTGGGA
TGGGGATTAATAAGGCGGATATTCGCTATGTGATTCATTATCACCTGCCACAAAACATCGAAAGTTACTTGCAAGAAATT
GGACGGGCAGGTCGAGACGGGCAACCAGCCTATGCTTTAGTCCTAACAACTCCGCAAGATTTATATTTACAACAATCACT
CGTTTCATTTGGCATTCCGGAACCAGGCCTCATTCGGCGCTATTATCAGGAACCGCAATTATTTAAACAAAGTCAAGGCA
ATGAATTTGAACTACTACGTCGCTACCAGCAACTGGGGATGACCGAAGAAGAGGTCATTAAGTTATTGGATAATCGTCAA
ACCGAAAAGCAGTTTTCACTACAAACGATGCTGGATTATTTGACCCTCAAGGGCTGTCGACGGCAATTTATTGTGAACTA
TTTTGACCAGGCACCAAAGACGATTGAACACAGCGAAACGTGTTGCGGGGAACAGGATTCGACCGACTTTTTAGCACAAT
TAAACTTAGAACAGGCTATTAATTATAAAACCGCTGAAACCGTTGTTCTGACTGGTTGGACGGGAATCTTGGACCAATTA
TTTTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(22-181)

Helicase conserved C-terminal domain (Helicase_C)

(219-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

40.937

100

0.418