Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QBD03_RS03855 Genome accession   NZ_CP122959
Coordinates   791533..793236 (+) Length   567 a.a.
NCBI ID   WP_129584120.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 786533..798236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS03825 (QBD03_03825) folD 786812..787666 (+) 855 WP_162101015.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -
  QBD03_RS03830 (QBD03_03830) xseA 787659..789008 (+) 1350 WP_056936393.1 exodeoxyribonuclease VII large subunit -
  QBD03_RS03835 (QBD03_03835) - 789010..789240 (+) 231 WP_011374387.1 exodeoxyribonuclease VII small subunit -
  QBD03_RS03840 (QBD03_03840) - 789240..790112 (+) 873 WP_025015874.1 polyprenyl synthetase family protein -
  QBD03_RS03845 (QBD03_03845) - 790121..790951 (+) 831 WP_025015873.1 TlyA family RNA methyltransferase -
  QBD03_RS03850 (QBD03_03850) argR 791031..791483 (+) 453 WP_025015872.1 arginine repressor -
  QBD03_RS03855 (QBD03_03855) recN 791533..793236 (+) 1704 WP_129584120.1 DNA repair protein RecN Machinery gene
  QBD03_RS03860 (QBD03_03860) - 793295..793618 (-) 324 WP_025015871.1 hypothetical protein -
  QBD03_RS03865 (QBD03_03865) - 793738..793965 (+) 228 WP_197703335.1 YdbC family protein -
  QBD03_RS03870 (QBD03_03870) gmk 794038..794649 (+) 612 WP_011374394.1 guanylate kinase -
  QBD03_RS03875 (QBD03_03875) rpoZ 794654..794911 (+) 258 WP_011374395.1 DNA-directed RNA polymerase subunit omega -
  QBD03_RS03880 (QBD03_03880) coaBC 795000..796217 (+) 1218 WP_016264860.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 63222.20 Da        Isoelectric Point: 4.6999

>NTDB_id=744618 QBD03_RS03855 WP_129584120.1 791533..793236(+) (recN) [Latilactobacillus sakei strain HUP1]
MLQELVIHDFAIIDQLAISFDEGMTVLSGETGAGKSIIIDAVGLLAGGRGSQDFIRTGAKKATLEGLFTLPENGTTAALL
AEYGIEHDDQTILLQRDLALNGHNVCRVNGHLVNTTTLKKIGETLVDIHGQNEHQELMYPDRHLGLLDEFAHTTLASAKA
AYQETYQAYRQTEKALKKKQQNEQEWAQRLDMLKFQTNEIDAAQLQPDEESKLIEERAKLSNFQRINQALQASRAILSGE
EGNALDQIAIAMNQMQEIAELDPEFKRIADNLQTGYYTLQDSGSDISREVDNLEWDEARLDEIEQRLETINNLEHKYGDS
IPEILAYGAQITKELQAMQATEANASELEQQFEQQQAQLLQEAAVLSEKRQAAAQQLEKAVHQQLKALYMAKTVFKVEFA
TVDDQQFMRSGRDKVEFYIQPNPGEKLRPLAKTASGGELSRLMLALKTIFSESQGVTSIIFDEVDTGVSGRVAQAIANKI
SEIAQHSQVLCITHLPQVAAMSDHQYQIQKQIKQNRTETSIQKVTGKKRVAELARMLAGTEVTELTLEHAQELVDLAETA
KAQIRQA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=744618 QBD03_RS03855 WP_129584120.1 791533..793236(+) (recN) [Latilactobacillus sakei strain HUP1]
ATGCTACAAGAATTAGTCATTCACGACTTTGCAATTATAGATCAATTGGCCATTAGTTTCGATGAAGGGATGACGGTTCT
TTCTGGTGAAACTGGGGCCGGGAAATCGATTATTATCGACGCGGTTGGCCTACTCGCTGGTGGTCGGGGGTCACAGGATT
TCATCCGAACCGGTGCGAAAAAAGCGACGTTAGAGGGCTTGTTCACATTACCCGAAAACGGCACGACTGCCGCGCTTTTA
GCTGAATATGGGATTGAACACGATGATCAAACCATTTTATTACAACGTGATTTGGCATTAAACGGGCATAATGTTTGCCG
CGTTAATGGGCATCTGGTCAATACCACGACGCTTAAAAAGATTGGAGAAACATTAGTTGATATTCACGGTCAAAACGAAC
ATCAAGAATTAATGTATCCTGATCGCCATCTAGGCTTGTTGGATGAGTTTGCCCACACAACCTTGGCGAGTGCTAAGGCG
GCCTATCAAGAAACCTATCAGGCTTACCGGCAAACGGAAAAAGCGTTGAAGAAGAAACAACAAAATGAGCAGGAATGGGC
CCAACGCCTTGATATGCTTAAATTTCAAACTAATGAAATTGACGCCGCGCAATTACAACCAGATGAAGAAAGTAAGTTAA
TCGAAGAACGCGCGAAACTCAGCAACTTCCAACGGATTAATCAGGCCTTGCAAGCTAGTCGCGCCATTTTATCTGGTGAA
GAAGGCAACGCGCTAGATCAAATCGCGATTGCGATGAATCAGATGCAAGAAATCGCGGAATTAGATCCTGAATTCAAAAG
AATTGCCGATAATCTACAAACAGGCTATTACACACTGCAAGATAGCGGTAGTGATATTAGTCGGGAAGTCGATAATCTTG
AATGGGACGAAGCGCGCTTGGATGAAATTGAACAGCGCTTAGAAACGATCAATAATCTCGAACATAAATATGGCGATTCA
ATTCCTGAAATCTTAGCTTATGGGGCGCAAATTACCAAAGAATTGCAAGCGATGCAGGCCACAGAAGCCAATGCAAGCGA
ATTAGAGCAACAATTTGAACAACAACAAGCCCAATTGCTGCAAGAAGCAGCCGTTCTTTCTGAGAAACGCCAAGCTGCTG
CTCAACAGTTGGAAAAGGCTGTTCACCAACAACTCAAAGCGCTCTATATGGCTAAAACGGTTTTCAAAGTTGAATTTGCC
ACGGTTGATGACCAGCAATTTATGCGTAGTGGTCGGGACAAAGTTGAATTTTATATTCAACCTAATCCGGGTGAGAAGCT
ACGGCCGCTTGCCAAGACTGCTTCTGGTGGGGAATTATCCCGATTGATGTTGGCGCTTAAAACGATTTTCTCAGAATCAC
AAGGCGTTACCAGCATTATTTTTGATGAAGTTGATACTGGGGTCAGTGGGCGTGTTGCGCAAGCAATTGCCAATAAAATT
AGCGAAATTGCCCAACACTCACAAGTCCTCTGTATTACGCATTTGCCACAAGTAGCGGCGATGAGTGATCATCAATACCA
AATTCAAAAACAAATTAAACAAAACCGCACAGAAACATCAATCCAAAAGGTAACCGGTAAAAAACGCGTTGCTGAACTGG
CTCGTATGTTGGCGGGGACAGAAGTGACGGAATTAACGCTAGAACACGCCCAAGAATTAGTGGACCTCGCAGAAACTGCT
AAAGCACAGATTAGACAAGCTTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.819

100

0.464