Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   QBD03_RS00670 Genome accession   NZ_CP122959
Coordinates   134015..136306 (+) Length   763 a.a.
NCBI ID   WP_280102943.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain HUP1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 129015..141306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBD03_RS00645 (QBD03_00645) - 129277..129735 (+) 459 WP_011373843.1 MarR family transcriptional regulator -
  QBD03_RS00650 (QBD03_00650) - 130219..131121 (-) 903 WP_011373844.1 proline-specific peptidase family protein -
  QBD03_RS00655 (QBD03_00655) - 131195..133033 (-) 1839 WP_280102940.1 cation:proton antiporter family protein -
  QBD03_RS00660 (QBD03_00660) crcB 133170..133577 (+) 408 WP_280102941.1 fluoride efflux transporter CrcB -
  QBD03_RS00665 (QBD03_00665) - 133574..133921 (+) 348 WP_280102942.1 CrcB family protein -
  QBD03_RS00670 (QBD03_00670) helD 134015..136306 (+) 2292 WP_280102943.1 RNA polymerase recycling motor HelD Machinery gene
  QBD03_RS00675 (QBD03_00675) coaA 136422..137351 (+) 930 WP_025016146.1 type I pantothenate kinase -
  QBD03_RS00680 (QBD03_00680) guaA 137518..139071 (+) 1554 WP_016264413.1 glutamine-hydrolyzing GMP synthase -
  QBD03_RS00685 (QBD03_00685) - 139211..140578 (+) 1368 WP_280102944.1 hypothetical protein -
  QBD03_RS00690 (QBD03_00690) tnpA 140692..141117 (+) 426 Protein_136 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 87699.65 Da        Isoelectric Point: 6.3686

>NTDB_id=744594 QBD03_RS00670 WP_280102943.1 134015..136306(+) (helD) [Latilactobacillus sakei strain HUP1]
MTDVQKSLEQSRLTEIIGLIKKAETHFEGAVKRAKSEEKEINENFFNDVRLNFNNDSAMTETAVSIEQQRQMLQERNHSW
QQSSRQLETLQKMEKTPYFARVDFQEKGEPKSESIYIGLGSFTDTDDHFLIYDWRAPISSIYYEGKTGAVTYQTPDGPQD
VNISLKRQFLIEDGQIKALFDTQETIGDQMLLEVLGEKSDTQMKSIVTTIQREQNQIIRNTDADLLFVQGAAGSGKTSAI
LQRIAFLLYRYRGNLDSSQVIMFSPNQLFNDYIADVLPELGEQNMIQMTYFQYVARRLPNMAVQSLFDQFETPVNETDGR
ISRLKESLVFYKAVKKYAAHLEKADMRFRDMKVKGRVLITKEHINDVYYRFNENYHLGNRLDATKESLLRTLSHKVDHET
KADWVTEQAENMSDEEIRELMSGKDFKTGDAESKFIAKQIVLEAFKPVRRSIQRNRFLSIQAQYIHFLRVVPQLVKLADF
DITEEQWQDHVTHFVAQLKAKQMTLQDVTPYLHLYDLMTGKKGERDMRFVFIDEIQDYTPYELAFLKLHFPKARFTLLGD
LNQAIFTKGNSTNLLQQVQQLFDAQNTKVVQLTRSYRSTQQVTDFTKGLLKGGQAIEAFNRVGDKPNLIVRQSEAELVAD
VNRQLAANEADKLSTAIITKTLVQAQALTEMLKETGTKVTLIRSENQRLAAGTLVVPSFLAKGLEFDAIIGWQISAANYN
HEDQRQLLYTICSRAMHRLTLLATDALSPLIDNVDPEKYTLTK

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=744594 QBD03_RS00670 WP_280102943.1 134015..136306(+) (helD) [Latilactobacillus sakei strain HUP1]
TTGACTGACGTACAGAAATCATTGGAACAAAGCCGATTAACAGAAATTATTGGTTTAATTAAAAAAGCTGAGACCCATTT
TGAAGGGGCTGTTAAGCGCGCAAAATCGGAAGAAAAAGAAATTAACGAGAACTTCTTTAACGACGTTCGCCTTAACTTCA
ATAACGATTCCGCGATGACTGAAACCGCCGTTTCGATTGAACAGCAGCGGCAAATGCTACAAGAACGCAATCACTCGTGG
CAACAATCTTCACGGCAATTGGAAACCTTGCAAAAGATGGAAAAGACACCGTACTTTGCCCGTGTTGATTTTCAAGAAAA
GGGTGAACCTAAATCCGAATCAATTTATATCGGCCTAGGTTCATTTACGGATACCGACGATCATTTCTTAATTTATGATT
GGCGGGCACCAATTTCATCAATTTACTATGAAGGTAAGACGGGCGCTGTGACGTACCAAACACCAGACGGTCCGCAAGAT
GTGAATATCTCACTTAAACGCCAATTCTTAATTGAAGATGGCCAAATCAAGGCTTTATTTGATACGCAAGAAACGATTGG
CGATCAAATGTTATTAGAAGTGTTAGGTGAAAAATCCGATACACAGATGAAGAGTATCGTGACGACGATTCAACGTGAAC
AAAATCAGATTATCCGTAATACGGATGCTGATTTGTTATTCGTTCAAGGGGCAGCTGGCTCAGGGAAAACGTCAGCTATC
TTGCAACGTATCGCGTTTTTACTCTATCGTTATCGGGGGAATTTAGATTCGAGCCAAGTAATCATGTTCTCGCCTAACCA
ATTATTCAACGACTACATCGCAGATGTGTTGCCTGAATTGGGTGAACAAAATATGATTCAAATGACCTACTTCCAATATG
TGGCACGCCGGTTACCAAACATGGCAGTCCAGAGCCTTTTTGATCAATTCGAAACACCGGTTAACGAAACCGATGGCCGG
ATTAGTCGCTTGAAAGAAAGTCTCGTCTTTTATAAGGCTGTTAAAAAGTACGCTGCGCATCTTGAAAAAGCCGACATGCG
CTTCCGCGATATGAAGGTCAAGGGCCGCGTCTTGATTACAAAAGAGCATATCAACGACGTTTATTACCGCTTCAATGAAA
ACTACCATCTTGGCAATCGATTAGATGCCACTAAAGAAAGTTTGTTGCGGACATTGAGCCACAAGGTTGATCACGAAACC
AAGGCTGACTGGGTGACTGAGCAAGCCGAGAATATGAGTGATGAAGAAATCCGCGAATTGATGTCTGGTAAAGATTTCAA
GACGGGCGATGCTGAAAGCAAGTTTATCGCTAAGCAAATCGTGCTAGAGGCCTTCAAACCCGTTCGCCGGTCTATTCAAC
GTAATCGCTTCTTAAGCATCCAGGCGCAATATATTCACTTCTTACGGGTTGTGCCACAACTTGTGAAGTTAGCCGATTTT
GATATTACAGAAGAGCAATGGCAAGACCACGTCACGCATTTTGTCGCACAATTGAAGGCTAAGCAGATGACGTTGCAAGA
TGTCACACCTTATCTTCACCTCTACGATTTGATGACGGGTAAAAAAGGTGAACGTGATATGCGTTTTGTCTTCATCGATG
AAATTCAAGATTACACGCCTTATGAATTGGCCTTCTTGAAGCTCCATTTCCCTAAGGCCCGCTTCACATTATTGGGCGAT
TTGAACCAAGCGATTTTCACTAAGGGTAACAGCACAAATCTCTTGCAACAAGTCCAACAATTATTTGATGCCCAAAATAC
AAAAGTGGTGCAATTAACGCGTTCATACCGGTCAACGCAACAAGTGACCGATTTTACCAAAGGCTTATTAAAAGGTGGCC
AAGCCATTGAAGCCTTCAACCGCGTTGGCGATAAACCAAACTTGATTGTGCGCCAATCAGAAGCTGAGTTAGTGGCTGAT
GTGAACCGCCAATTAGCAGCAAATGAGGCAGACAAATTGTCGACGGCGATTATTACCAAGACATTGGTGCAAGCCCAAGC
ATTGACGGAGATGCTCAAGGAAACAGGTACGAAAGTCACCTTGATTCGTTCCGAAAACCAACGTTTAGCAGCCGGGACAT
TAGTGGTCCCAAGTTTCTTAGCTAAAGGTTTGGAATTCGATGCCATTATTGGCTGGCAAATCAGTGCCGCCAACTACAAT
CATGAAGATCAACGTCAATTGCTCTACACGATTTGTTCAAGAGCAATGCATCGCTTGACCTTGTTAGCCACTGATGCACT
TTCACCATTGATTGATAACGTCGATCCAGAAAAATATACATTAACGAAATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(700-741)

AAA domain (AAA_19)

(214-566)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

38.581

100

0.392