Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   QAP06_RS00845 Genome accession   NZ_CP122954
Coordinates   182640..183953 (+) Length   437 a.a.
NCBI ID   WP_286465876.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS06     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 177640..188953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAP06_RS00825 (QAP06_00825) crdR 177960..178601 (+) 642 WP_286465872.1 copper response regulator transcription factor CrdR -
  QAP06_RS00830 (QAP06_00830) crdS 178567..179769 (+) 1203 WP_286467325.1 copper-sensing histidine kinase CrdS -
  QAP06_RS00835 (QAP06_00835) - 179772..181172 (+) 1401 WP_286465873.1 NAD(P)H-hydrate dehydratase -
  QAP06_RS00840 (QAP06_00840) - 181183..182643 (+) 1461 WP_078249153.1 replicative DNA helicase -
  QAP06_RS00845 (QAP06_00845) comEC/comE3 182640..183953 (+) 1314 WP_286465876.1 ComEC/Rec2 family competence protein Machinery gene
  QAP06_RS00850 (QAP06_00850) mqnP 184024..184866 (+) 843 WP_286465878.1 menaquinone biosynthesis prenyltransferase MqnP -
  QAP06_RS00855 (QAP06_00855) - 184859..185353 (+) 495 WP_162970133.1 hypothetical protein -
  QAP06_RS00860 (QAP06_00860) - 185366..185869 (+) 504 WP_000953117.1 hypothetical protein -
  QAP06_RS00865 (QAP06_00865) - 185866..186669 (+) 804 WP_140484663.1 phosphatidylserine decarboxylase -
  QAP06_RS00870 (QAP06_00870) nadA 186659..187669 (+) 1011 WP_286465883.1 quinolinate synthase NadA -
  QAP06_RS00875 (QAP06_00875) nadC 187669..188490 (+) 822 WP_021304172.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50195.16 Da        Isoelectric Point: 9.8572

>NTDB_id=744467 QAP06_RS00845 WP_286465876.1 182640..183953(+) (comEC/comE3) [Helicobacter pylori strain BS06]
MKDKTFQGAFELLSTPKEYLLCGVILSLLLSLNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGRIKPCFFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSNALAGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYIPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSVRSFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=744467 QAP06_RS00845 WP_286465876.1 182640..183953(+) (comEC/comE3) [Helicobacter pylori strain BS06]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTATCACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCTTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAGGATCAAACCTTGCTT
TTTTTTAGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTTAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAACGCTTTAGCGGGTAATTTGTATCGAGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTATTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTTTATTTTCTTTTCTCTCTTTTTTATATCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTCTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTGGATTTTTTACCCTCTTTTTTCAGGGCG
TTTCTAATGGGTTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTGTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAAGTCATAAGCTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTGTTTTTAACG
ATTCTAAGCGTGCGTTCTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(159-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941