Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   PH204_RS06540 Genome accession   NZ_CP122953
Coordinates   1382722..1383771 (+) Length   349 a.a.
NCBI ID   WP_286446992.1    Uniprot ID   -
Organism   Helicobacter pylori strain BS30     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1377722..1388771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH204_RS06520 (PH204_06520) - 1377785..1378198 (-) 414 WP_001023005.1 universal stress protein -
  PH204_RS06525 (PH204_06525) - 1378306..1380126 (+) 1821 WP_286446986.1 hypothetical protein -
  PH204_RS06530 (PH204_06530) asd 1380305..1381345 (-) 1041 WP_286446988.1 aspartate-semialdehyde dehydrogenase -
  PH204_RS06535 (PH204_06535) hisS 1381332..1382660 (-) 1329 WP_286446990.1 histidine--tRNA ligase -
  PH204_RS06540 (PH204_06540) waaF 1382722..1383771 (+) 1050 WP_286446992.1 lipopolysaccharide heptosyltransferase II Regulator
  PH204_RS06545 (PH204_06545) - 1383960..1384394 (-) 435 WP_000744159.1 hypothetical protein -
  PH204_RS06550 (PH204_06550) fusA 1384932..1387010 (-) 2079 WP_015643837.1 elongation factor G -
  PH204_RS06555 (PH204_06555) rpsG 1387022..1387489 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  PH204_RS06560 (PH204_06560) rpsL 1387505..1387912 (-) 408 WP_001142321.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39482.25 Da        Isoelectric Point: 9.8896

>NTDB_id=744458 PH204_RS06540 WP_286446992.1 1382722..1383771(+) (waaF) [Helicobacter pylori strain BS30]
MSVNASKRMRILLRLPNWLGDGVMASSLFYTLKHHYPNAHFILVGPQITCELFKKDEKIEAVFIDNTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPIRIGFAQFFRSLFLSHAVTTAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPIHTPNTPKKIGFNPSASYGSAKRWPASYYAKAAAALLEKGHEIYFFGAKEDTIVSEEILKLIKGLLKNPLLSR
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVATSTQTPLIALFGPTDEKETSPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLQAAHTLLEEP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=744458 PH204_RS06540 WP_286446992.1 1382722..1383771(+) (waaF) [Helicobacter pylori strain BS30]
ATGAGCGTAAATGCGTCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAATGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTCATAGACAACACCAAAAAATCCTTTTTCAGACTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACCTTAAACAACCATTTTTATTCTGCTTTTTTGCTCTATGCGACAAA
AACGCCTATTCGCATCGGTTTTGCTCAATTTTTCCGTTCTTTGTTTCTCAGCCATGCAGTAACTACTGCCCCTAAAGAGT
ATCACCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAATTAGCCTTTAATCTCCCCATTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCCAAAGCCGCTGCTGCTTTGTTAGAAAAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTGTTAAAAAACCCCTTATTATCCCGT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAACGCATCGCAATTTTAGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTACTAGCACGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTAGCCCCTATAAAGCTCAAAAAACGATTGTGTTGAACCACCATTTAAGCTGTTCGCCATGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCACTTGTGCATGAAATCTATCACGCCCCTTGAAGTCCTTCAAGCCGCTCACACTCTTTTAGA
AGAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.353

97.421

0.364