Detailed information NTG0074401

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: K5706_RS07820
• Genome accession: NZ_AP019849
• Coordinates: 1775043..1776464 (+)
• Length: 473 a.a.
• NCBI ID: WP_221069420.1
• Uniprot ID: -
• Organism: Vibrio alfacsensis strain 04Ya249
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1770043..1781464

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K5706_RS07810 (VA249_14840)	-	1771540..1774569 (+)	3030	WP_221069418.1	EAL domain-containing protein	-
K5706_RS07815 (VA249_14850)	-	1774608..1774874 (-)	267	WP_225923897.1	Arm DNA-binding domain-containing protein	-
K5706_RS07820 (VA249_14860)	sbcB	1775043..1776464 (+)	1422	WP_221069420.1	exodeoxyribonuclease I	Machinery gene
K5706_RS07825 (VA249_14870)	-	1776523..1776897 (+)	375	WP_128811003.1	CidA/LrgA family protein	-
K5706_RS07830 (VA249_14880)	-	1776899..1777575 (+)	677	Protein_1470	CidB/LrgB family autolysis modulator	-
K5706_RS07835 (VA249_14900)	cdd	1777950..1778837 (+)	888	WP_221069422.1	cytidine deaminase	-
K5706_RS07840 (VA249_14910)	purT	1778985..1780160 (+)	1176	WP_221069424.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
K5706_RS07845 (VA249_14920)	-	1780299..1780949 (-)	651	WP_221069426.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54570.84 Da
• Isoelectric Point: 5.1059

>NTDB_id=74401 K5706_RS07820 WP_221069420.1 1775043..1776464(+) (sbcB) [Vibrio alfacsensis strain 04Ya249]
MNNSEQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGISPQKAMQEGLSEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKFFDYFYSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHQRLYTKREELGGQLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQKCLDNLALLRQHPEIREKLINLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPINLAALDIEFGDKR
IKPLLFRYRARHYPNTLDEQEQRRWTLHCRDVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=74401 K5706_RS07820 WP_221069420.1 1775043..1776464(+) (sbcB) [Vibrio alfacsensis strain 04Ya249]
ATGAACAATTCAGAACAACCGACATTCTTTTTCTTTGACTATGAGACTTGGGGAACAAGCCCAGCCAAAGATCGCCCTAG
CCAATTTGCTGGCGTTCGTACAGATGAAAACTTTAATATCATTGGCGAACCTTTGGTGATGTACTGCCGACCACCTGCGG
ATTACCTCCCGTCTCCAGAGGCCGCTTTAATTACCGGTATTTCACCGCAAAAAGCAATGCAAGAGGGCCTTTCTGAGCCT
GAATTTATTGCTAAAATTCACGCTGAGCTCTCTAAGCCAAATACCACAAGTCTTGGGTACAACAGCATTCGTTTCGATGA
CGAAGTCACCCGTTACACCTGTTACCGAAACTTTATCGACCCTTATGCATGGAGTTGGCAAAATGGTAACTCGCGCTGGG
ACTTACTCGATGTTATGCGTGCTTGTCACGCTTTACGTCCTGAGGGCGTGGAGTGGCCAGAAAACGAAGAGGGCTTTACG
AGCTTTAAGCTAGAGCATTTATCAGTGGCAAATGGCATTGAACACAGCAATGCCCATGACGCAATGGCAGATGTCATCGC
TACCATTGAAATGGCCAAAAAAGTCAAAGCCGCACAGCCTAAGTTTTTCGACTACTTCTACTCAATGCGCCATAAGCGAA
AACTTAATGAGTTAGTCGATATCGTCAACATGACGCCATTAATGCACGTTTCTGGCATGTTAGGGCGAGAGTGTCAGTAC
ACCAGTTGGATTGTACCTGTCGCTTGGCACCCAACCAATAATAATGCGGTTATCACGATTGATTTGGCAAAAGATCCTCA
ACCAATTCTTGAGCTGTCGGCAGAAGAGTTACACCAACGCTTATACACCAAACGTGAAGAATTAGGCGGTCAACTGCCTG
TGCCGGTAAAACTTGTTCATTTAAACAAGTGCCCTATTCTTGCTCCAGCGAAAACGCTGACGGCAGAAAATGCCGAATCC
ATTGGCATTGATCGTCAGAAATGTCTTGATAACCTTGCCTTGCTGCGTCAACACCCAGAAATTCGTGAGAAGCTCATCAA
TCTATTCTCTATTGAGCGTCAGTTTGAAAAAAGTGATGATGTTGATACACAGCTTTATGATGGTTTCTTCTCACCAGCCG
ATCGTGCAGCAATGGACATCATTCGCGAAACTGATCCTATCAATCTCGCGGCGCTTGATATCGAATTTGGCGATAAACGC
ATTAAACCCTTGCTATTTCGCTACCGAGCACGTCATTATCCAAACACGTTAGATGAACAAGAACAAAGACGCTGGACGCT
CCATTGTCGTGATGTTTTCGAAAGCCAAATCGAAGAGTACATGCTTAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAAAAGATAGCAATACTAAAATCAGTCTATCGTTATGTAGAGAGTCTAGCCTCATAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-190)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	78.647	100	0.786