Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   OFO16_RS15185 Genome accession   NZ_CP107282
Coordinates   3269347..3270456 (-) Length   369 a.a.
NCBI ID   WP_263837718.1    Uniprot ID   -
Organism   Vibrio natriegens strain PWH3a     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3264347..3275456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OFO16_RS15155 (OFO16_15155) hemF 3264800..3265717 (-) 918 WP_263837715.1 oxygen-dependent coproporphyrinogen oxidase -
  OFO16_RS15160 (OFO16_15160) - 3265766..3266323 (-) 558 WP_014233380.1 L-threonylcarbamoyladenylate synthase -
  OFO16_RS15165 (OFO16_15165) purE 3266529..3267014 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  OFO16_RS15170 (OFO16_15170) - 3267019..3268152 (+) 1134 WP_263837716.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  OFO16_RS15175 (OFO16_15175) - 3268222..3268782 (-) 561 WP_263837717.1 type I DNA topoisomerase -
  OFO16_RS15180 (OFO16_15180) - 3268865..3269344 (-) 480 WP_031779194.1 DUF494 family protein -
  OFO16_RS15185 (OFO16_15185) dprA 3269347..3270456 (-) 1110 WP_263837718.1 DNA-processing protein DprA Machinery gene
  OFO16_RS15190 (OFO16_15190) - 3270440..3271534 (-) 1095 WP_263837719.1 LysM peptidoglycan-binding domain-containing protein -
  OFO16_RS15195 (OFO16_15195) def 3271673..3272191 (+) 519 WP_014233386.1 peptide deformylase -
  OFO16_RS15200 (OFO16_15200) fmt 3272226..3273173 (+) 948 WP_263837720.1 methionyl-tRNA formyltransferase -
  OFO16_RS15205 (OFO16_15205) rsmB 3273256..3274539 (+) 1284 WP_263837721.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39953.77 Da        Isoelectric Point: 7.0589

>NTDB_id=739289 OFO16_RS15185 WP_263837718.1 3269347..3270456(-) (dprA) [Vibrio natriegens strain PWH3a]
MKPLNENDLVAWLKLSCLPGIGGVKLNQLLAKDTPRNIINSSHKYLQRLGLSQKQLQAWTSVDKEVEACLNWKELASNHH
ILTLDDPLYPPLLKQIVAPPPLLFLQGDPTCLSQPQIAMVGSRNASVDGLQYARHFAADFVSNDLIVTSGLALGIDGHAH
DGALQAGGRTIAVLGSGLAHIYPARHRGLAQRVAESGALISEFRPNAKPRAEHFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAKNASGGNHLIRNGACLVEKTKDVLDEIQSLLDWSVNQSRDLFSTLNDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=739289 OFO16_RS15185 WP_263837718.1 3269347..3270456(-) (dprA) [Vibrio natriegens strain PWH3a]
ATGAAACCACTCAATGAGAATGACCTTGTTGCTTGGCTAAAGCTAAGTTGCTTGCCAGGCATAGGCGGGGTCAAACTGAA
TCAGTTACTTGCTAAAGACACGCCTCGAAACATCATCAACTCCTCTCATAAATACCTGCAGCGCCTTGGATTAAGTCAAA
AGCAACTTCAGGCTTGGACGTCGGTCGATAAAGAAGTTGAAGCTTGCCTCAATTGGAAAGAGCTCGCTTCGAATCACCAT
ATTCTAACTTTAGATGATCCGCTTTACCCTCCGCTACTTAAACAGATTGTTGCACCGCCGCCCCTGTTGTTTTTGCAAGG
CGATCCTACGTGTTTATCTCAGCCTCAGATTGCTATGGTGGGAAGCCGTAACGCGAGTGTTGACGGATTACAGTACGCTC
GCCACTTTGCCGCAGATTTCGTTAGTAATGATCTTATTGTAACCAGTGGATTAGCTTTGGGCATTGATGGTCATGCGCAT
GACGGAGCGTTGCAAGCGGGAGGAAGGACGATCGCGGTTCTTGGCTCTGGCTTGGCACATATTTATCCAGCCCGGCACCG
TGGGTTGGCACAGCGCGTTGCAGAGAGTGGTGCACTGATTTCAGAATTTCGCCCAAATGCAAAGCCACGAGCGGAGCACT
TTCCACGTCGTAACCGAATTATCAGTGGGTTATCTCTGGGAGTGTTAGTTGTCGAAGCGGCAGAGAAAAGCGGTTCTTTA
ATTACGGCGCGTTATGCGCTTGAGCAAGGACGTGAAGTGTTTGCTCTGCCTGCTTCTATTAATGCGAAAAATGCCAGTGG
CGGAAATCATTTGATTCGCAATGGTGCTTGCCTCGTAGAAAAGACAAAAGATGTACTTGATGAAATACAGTCATTGCTTG
ATTGGTCTGTTAATCAGAGCAGAGATTTATTTTCTACCTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTCTCAGGGCACGTTGTTGCAGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.385

100

0.824
  dprA Vibrio cholerae strain A1552

57.682

100

0.58
  dprA Glaesserella parasuis strain SC1401

45.43

100

0.458
  dprA Legionella pneumophila strain ERS1305867

47.352

86.992

0.412
  dprA Haemophilus influenzae Rd KW20

43.516

94.038

0.409
  dprA Neisseria meningitidis strain C311

35.516

100

0.382
  dprA Neisseria meningitidis MC58

35.516

100

0.382
  dprA Neisseria gonorrhoeae MS11

34.43

100

0.369
  dprA Neisseria gonorrhoeae strain FA1090

34.177

100

0.366
  dprA Acinetobacter baylyi ADP1

39.701

90.786

0.36