Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   OHM01_RS10170 Genome accession   NZ_CP107274
Coordinates   1934803..1935990 (+) Length   395 a.a.
NCBI ID   WP_003690292.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 1145734     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 1929803..1940990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM01_RS10155 (OHM01_10155) - 1930723..1931322 (+) 600 WP_003690290.1 DUF4390 domain-containing protein -
  OHM01_RS10160 (OHM01_10160) - 1931322..1933442 (+) 2121 WP_003690126.1 HAMP domain-containing histidine kinase -
  OHM01_RS10165 (OHM01_10165) - 1933435..1934712 (+) 1278 WP_003690124.1 sigma-54 dependent transcriptional regulator -
  OHM01_RS10170 (OHM01_10170) dprA 1934803..1935990 (+) 1188 WP_003690292.1 DNA-processing protein DprA Machinery gene
  OHM01_RS10175 (OHM01_10175) - 1936016..1936477 (+) 462 WP_003690120.1 DUF494 domain-containing protein -
  OHM01_RS10180 (OHM01_10180) topA 1936555..1938861 (+) 2307 WP_263936397.1 type I DNA topoisomerase -
  OHM01_RS10185 (OHM01_10185) - 1938948..1939744 (+) 797 Protein_1956 IS1595 family transposase -
  OHM01_RS10190 (OHM01_10190) - 1939842..1940657 (+) 816 WP_263936398.1 opacity family porin -

Sequence


Protein


Download         Length: 395 a.a.        Molecular weight: 41880.98 Da        Isoelectric Point: 6.3096

>NTDB_id=739147 OHM01_RS10170 WP_003690292.1 1934803..1935990(+) (dprA) [Neisseria gonorrhoeae strain 1145734]
MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSAPAEQVAPAVRHKHALEAWRNAEKRALARQAAEAALEWEMRD
GCRLMLLQDEDFPEMLTQGLTAPPVLFLRGNVRLLHKPSAAIVGSRHATPQAMRIAKDFGRALGGKGIPTVSGMASGIDT
AAHQGALEAEGGTIAVWGTGIDRIYPPANKNLAYEIAEKGLIVSEFPIGTRPYAGNFPRRNRLIAALSQVTLVVEAALES
GSLITAGLAAEMGREVMAVPGSIDNPHSKGCHKLIKDGAKLTECLDDILNECPGLLQNTGASSYSINKDTPDTGRRAVQT
AYAPPPAAKMPSEGAAGGTAVGGILDKMGFDPIHPDVLAGQLAMPAADLYAALLELELDGSVAAMPGGRYQRIRT

Nucleotide


Download         Length: 1188 bp        

>NTDB_id=739147 OHM01_RS10170 WP_003690292.1 1934803..1935990(+) (dprA) [Neisseria gonorrhoeae strain 1145734]
ATGACAGAGGACGAACGTTTCGCGTGGCTGCAATTGGCGTTTACGCCCTATATCGGCGCGGAAAGTTTCCTGCTGCTGAT
GCGCAGTTTCGGCAGCGCGCAAAATGCCTTGTCCGCACCGGCGGAACAGGTTGCCCCGGCGGTGCGGCATAAGCACGCGC
TTGAGGCTTGGCGCAATGCGGAAAAACGCGCTTTGGCGCGGCAGGCGGCAGAAGCGGCGTTGGAATGGGAAATGCGGGAC
GGATGCCGCCTGATGCTGCTTCAGGATGAAGATTTCCCCGAAATGCTGACGCAGGGGCTGACCGCGCCGCCGGTTTTGTT
TTTGCGCGGCAACGTGCGGCTGCTGCACAAGCCTTCCGCCGCCATCGTCGGCAGCCGCCATGCCACGCCGCAGGCGATGC
GGATTGCCAAAGATTTCGGCAGGGCGTTGGGTGGGAAAGGCATTCCTACCGTGTCGGGTATGGCTTCGGGCATCGACACC
GCCGCCCATCAGGGCGCACTGGAGGCAGAAGGCGGCACCATCGCCGTGTGGGGGACGGGCATAGACCGCATTTATCCGCC
GGCCAACAAAAACCTTGCCTATGAAATCGCCGAAAAAGGGCTGATTGTCAGCGAGTTCCCCATCGGCACGCGGCCGTATG
CCGGCAACTTTCCGCGCCGCAACCGCCTGATTGCCGCGCTGTCGCAGGTTACGCTGGTGGTCGAGGCCGCCTTGGAATCC
GGTTCGCTGATTACCGCCGGCCTGGCGGCAGAAATGGGGCGCGAAGTGATGGCGGTACCCGGTTCGATAGACAACCCCCA
CAGCAAAGGCTGCCACAAACTGATTAAAGACGGAGCGAAACTGACGGAATGTTTGGACGACATCCTGAACGAATGCCCGG
GGCTATTGCAAAATACGGGTGCTTCGTCATATTCTATAAATAAGGATACGCCCGACACGGGCCGCCGCGCCGTTCAGACG
GCATACGCCCCGCCGCCTGCCGCAAAAATGCCGTCTGAAGGGGCGGCAGGCGGCACAGCCGTCGGCGGCATACTGGATAA
AATGGGTTTCGACCCCATCCATCCCGACGTGCTTGCCGGACAGTTGGCTATGCCTGCCGCAGATTTGTATGCCGCACTGT
TGGAATTGGAATTGGACGGCAGCGTTGCCGCAATGCCCGGCGGCAGATACCAGCGTATCCGAACTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Neisseria gonorrhoeae MS11

99.747

100

0.997

  dprA Neisseria gonorrhoeae strain FA1090

99.494

100

0.995

  dprA Neisseria meningitidis strain C311

90.176

100

0.906

  dprA Neisseria meningitidis MC58

90.176

100

0.906

  dprA Vibrio cholerae strain A1552

37.28

100

0.375