Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ODQ18_RS15710 Genome accession   NZ_CP107039
Coordinates   3028881..3029399 (+) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain 11060     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3023881..3034399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS15690 (ODQ18_15690) yyzM 3024955..3025161 (+) 207 WP_003226838.1 DUF951 domain-containing protein -
  ODQ18_RS15695 (ODQ18_15695) yyaE 3025212..3027215 (+) 2004 WP_015715077.1 molybdopterin-dependent oxidoreductase -
  ODQ18_RS15700 (ODQ18_15700) ychF 3027342..3028442 (+) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  ODQ18_RS15705 (ODQ18_15705) rpsF 3028553..3028840 (+) 288 WP_003244064.1 30S ribosomal protein S6 -
  ODQ18_RS15710 (ODQ18_15710) ssbA 3028881..3029399 (+) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  ODQ18_RS15715 (ODQ18_15715) rpsR 3029443..3029682 (+) 240 WP_003219224.1 30S ribosomal protein S18 -
  ODQ18_RS15720 (ODQ18_15720) xth 3029747..3030505 (+) 759 WP_015250782.1 exodeoxyribonuclease III -
  ODQ18_RS15725 (ODQ18_15725) ccpB 3030565..3031500 (+) 936 WP_015715076.1 transcriptional regulator CcpB -
  ODQ18_RS15730 (ODQ18_15730) yyaH 3031556..3031936 (+) 381 WP_015715075.1 VOC family protein -
  ODQ18_RS15735 (ODQ18_15735) maa 3031952..3032506 (+) 555 WP_015250785.1 sugar O-acetyltransferase -
  ODQ18_RS15740 (ODQ18_15740) yyaJ 3032540..3033895 (-) 1356 WP_041850266.1 MFS transporter -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=737667 ODQ18_RS15710 WP_003219228.1 3028881..3029399(+) (ssbA) [Bacillus subtilis strain 11060]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=737667 ODQ18_RS15710 WP_003219228.1 3028881..3029399(+) (ssbA) [Bacillus subtilis strain 11060]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378