Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ODQ18_RS10090 Genome accession   NZ_CP107039
Coordinates   1937068..1937646 (-) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1932068..1942646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS10055 (ODQ18_10055) lepB 1932073..1932579 (-) 507 WP_003233128.1 signal peptidase I -
  ODQ18_RS10060 (ODQ18_10060) yhjE 1932581..1933204 (-) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  ODQ18_RS10065 (ODQ18_10065) - 1933356..1933727 (+) 372 WP_014476361.1 hypothetical protein -
  ODQ18_RS10070 (ODQ18_10070) yhjC 1933926..1934126 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ODQ18_RS10075 (ODQ18_10075) yhjB 1934123..1935592 (+) 1470 WP_029317574.1 sodium:solute symporter family protein -
  ODQ18_RS10080 (ODQ18_10080) yhjA 1935636..1935905 (-) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  ODQ18_RS10085 (ODQ18_10085) yhxD 1936122..1937021 (+) 900 WP_041851019.1 SDR family oxidoreductase -
  ODQ18_RS10090 (ODQ18_10090) comK 1937068..1937646 (-) 579 WP_029317573.1 competence transcription factor ComK Regulator
  ODQ18_RS10095 (ODQ18_10095) yhzC 1937939..1938172 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  ODQ18_RS10100 (ODQ18_10100) yhxC 1938200..1939057 (-) 858 WP_021479616.1 SDR family oxidoreductase -
  ODQ18_RS10105 (ODQ18_10105) comW 1939169..1940698 (+) 1530 WP_041851020.1 FAD-dependent oxidoreductase -
  ODQ18_RS21010 - 1940753..1941379 (+) 627 Protein_1993 protoglobin domain-containing protein -
  ODQ18_RS21015 - 1941620..1942135 (+) 516 WP_326255844.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=737649 ODQ18_RS10090 WP_029317573.1 1937068..1937646(-) (comK) [Bacillus subtilis strain 11060]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=737649 ODQ18_RS10090 WP_029317573.1 1937068..1937646(-) (comK) [Bacillus subtilis strain 11060]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGAGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995