Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   P9J63_RS15820 Genome accession   NZ_CP121375
Coordinates   3231741..3232625 (-) Length   294 a.a.
NCBI ID   WP_002125537.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LRT     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3226741..3237625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J63_RS15805 (P9J63_15805) miaB 3228588..3230039 (+) 1452 WP_002125580.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  P9J63_RS15810 (P9J63_15810) - 3230077..3231165 (+) 1089 WP_000122983.1 PhoH family protein -
  P9J63_RS15815 (P9J63_15815) ybeY 3231175..3231651 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  P9J63_RS15820 (P9J63_15820) tonB2 3231741..3232625 (-) 885 WP_002125537.1 energy transducer TonB Machinery gene
  P9J63_RS15825 (P9J63_15825) - 3232856..3233527 (+) 672 WP_001193961.1 hypothetical protein -
  P9J63_RS15830 (P9J63_15830) - 3233685..3234398 (+) 714 WP_000201548.1 DUF3108 domain-containing protein -
  P9J63_RS15835 (P9J63_15835) - 3234471..3235046 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  P9J63_RS15840 (P9J63_15840) wrbA 3235099..3235692 (-) 594 WP_001183358.1 NAD(P)H:quinone oxidoreductase -
  P9J63_RS15845 (P9J63_15845) - 3235980..3237227 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33630.51 Da        Isoelectric Point: 9.0947

>NTDB_id=737246 P9J63_RS15820 WP_002125537.1 3231741..3232625(-) (tonB2) [Acinetobacter baumannii strain LRT]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIHPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQNFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=737246 P9J63_RS15820 WP_002125537.1 3231741..3232625(-) (tonB2) [Acinetobacter baumannii strain LRT]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCATCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCATCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGC
CTTGAAGCTCAGTATTTACAACGTCAGCAAAATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
AAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCATTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterProScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

98.98

100

0.99