Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   P9J61_RS15020 Genome accession   NZ_CP121370
Coordinates   3072551..3073066 (+) Length   171 a.a.
NCBI ID   WP_000477151.1    Uniprot ID   V5VA61
Organism   Acinetobacter baumannii strain LRB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3067551..3078066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J61_RS15000 (P9J61_15000) - 3067897..3069357 (+) 1461 WP_032059048.1 amino acid permease -
  P9J61_RS15005 (P9J61_15005) - 3069633..3070838 (+) 1206 WP_000512701.1 RtcB family protein -
  P9J61_RS15010 (P9J61_15010) - 3070857..3071000 (+) 144 WP_162541494.1 hypothetical protein -
  P9J61_RS15015 (P9J61_15015) omp38 3071125..3072168 (-) 1044 WP_000777884.1 outer membrane protein Omp38 -
  P9J61_RS15020 (P9J61_15020) fimT 3072551..3073066 (+) 516 WP_000477151.1 GspH/FimT family pseudopilin Machinery gene
  P9J61_RS15025 (P9J61_15025) - 3073175..3074350 (+) 1176 WP_000129968.1 thiolase family protein -
  P9J61_RS15030 (P9J61_15030) - 3074477..3074920 (+) 444 WP_001176583.1 VOC family protein -
  P9J61_RS15035 (P9J61_15035) - 3074963..3075316 (-) 354 WP_000457783.1 SMR family transporter -
  P9J61_RS15040 (P9J61_15040) - 3075399..3075884 (-) 486 WP_000935246.1 DUF934 domain-containing protein -
  P9J61_RS15045 (P9J61_15045) - 3075877..3077520 (-) 1644 WP_000281767.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19606.86 Da        Isoelectric Point: 8.8196

>NTDB_id=737174 P9J61_RS15020 WP_000477151.1 3072551..3073066(+) (fimT) [Acinetobacter baumannii strain LRB]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=737174 P9J61_RS15020 WP_000477151.1 3072551..3073066(+) (fimT) [Acinetobacter baumannii strain LRB]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5VA61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427