Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   P8R99_RS09470 Genome accession   NZ_CP121160
Coordinates   1797050..1797559 (+) Length   169 a.a.
NCBI ID   WP_001883456.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S5     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1792050..1802559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R99_RS09445 - 1792069..1792938 (+) 870 WP_000858923.1 5'-nucleotidase, lipoprotein e(P4) family -
  P8R99_RS09450 - 1793073..1794269 (+) 1197 WP_001096753.1 phosphoglycerate kinase -
  P8R99_RS09455 - 1794532..1795071 (+) 540 WP_000854121.1 aromatic acid exporter family protein -
  P8R99_RS09460 - 1795151..1795522 (+) 372 WP_000664338.1 MerR family transcriptional regulator -
  P8R99_RS09465 glnA 1795556..1796902 (+) 1347 WP_000156225.1 type I glutamate--ammonia ligase -
  P8R99_RS09470 lytF 1797050..1797559 (+) 510 WP_001883456.1 CHAP domain-containing protein Regulator
  P8R99_RS09475 - 1797721..1799400 (-) 1680 WP_000065498.1 ribonuclease J -
  P8R99_RS09480 - 1799454..1799684 (-) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  P8R99_RS09485 tsaB 1799863..1800555 (+) 693 WP_000978604.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  P8R99_RS09490 rimI 1800557..1800964 (+) 408 WP_000445943.1 ribosomal protein S18-alanine N-acetyltransferase -
  P8R99_RS09495 tsaD 1801040..1802050 (+) 1011 WP_000655084.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18360.32 Da        Isoelectric Point: 4.4055

>NTDB_id=736274 P8R99_RS09470 WP_001883456.1 1797050..1797559(+) (lytF) [Streptococcus agalactiae strain S5]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADVNTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=736274 P8R99_RS09470 WP_001883456.1 1797050..1797559(+) (lytF) [Streptococcus agalactiae strain S5]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGTGAATACATATAACTATGCAGTAGATGTAGACTATCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGGTTATACAGTAGGAACACAACCGCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTGACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

55.118

75.148

0.414