Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   P8R99_RS07565 Genome accession   NZ_CP121160
Coordinates   1416182..1416772 (+) Length   196 a.a.
NCBI ID   WP_000272490.1    Uniprot ID   Q3JYM8
Organism   Streptococcus agalactiae strain S5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1411182..1421772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R99_RS07550 - 1412514..1412717 (-) 204 WP_000191849.1 cold shock domain-containing protein -
  P8R99_RS07555 hexB 1412943..1414916 (+) 1974 WP_000034615.1 DNA mismatch repair endonuclease MutL Machinery gene
  P8R99_RS07560 - 1414948..1416180 (+) 1233 WP_000657478.1 MFS transporter -
  P8R99_RS07565 ruvA 1416182..1416772 (+) 591 WP_000272490.1 Holliday junction branch migration protein RuvA Machinery gene
  P8R99_RS07570 - 1416795..1417346 (+) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  P8R99_RS07575 cinA 1417435..1418694 (+) 1260 WP_001200975.1 competence/damage-inducible protein A Machinery gene
  P8R99_RS07580 recA 1418768..1419907 (+) 1140 WP_001085741.1 recombinase RecA Machinery gene
  P8R99_RS07585 spx 1420123..1420521 (+) 399 WP_000591161.1 transcriptional regulator Spx -
  P8R99_RS07590 - 1420723..1420989 (+) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  P8R99_RS07595 ruvX 1420989..1421408 (+) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  P8R99_RS07600 - 1421434..1421751 (+) 318 WP_000940932.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21696.94 Da        Isoelectric Point: 5.7488

>NTDB_id=736247 P8R99_RS07565 WP_000272490.1 1416182..1416772(+) (ruvA) [Streptococcus agalactiae strain S5]
MYDYIKGKLSKITAKFIVVETAGLGYVIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNETVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=736247 P8R99_RS07565 WP_000272490.1 1416182..1416772(+) (ruvA) [Streptococcus agalactiae strain S5]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACGGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACGT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAGCAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGAGACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3JYM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.513

100

0.679
  ruvA Streptococcus pneumoniae D39

67.513

100

0.679
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408