Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   LLNCDO1820_RS11680 Genome accession   NZ_CP120927
Coordinates   2289931..2290524 (-) Length   197 a.a.
NCBI ID   WP_003131995.1    Uniprot ID   Q9CDL2
Organism   Lactococcus lactis subsp. lactis strain NCDO1820     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2284931..2295524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLNCDO1820_RS11655 (LLNCDO1820_11650) - 2285140..2285304 (-) 165 WP_003131988.1 hypothetical protein -
  LLNCDO1820_RS11660 (LLNCDO1820_11655) - 2285409..2286026 (-) 618 WP_010906379.1 AAA family ATPase -
  LLNCDO1820_RS11665 (LLNCDO1820_11660) - 2286023..2287207 (-) 1185 WP_010906380.1 ABC transporter permease -
  LLNCDO1820_RS11670 (LLNCDO1820_11665) - 2287783..2288667 (-) 885 WP_010906381.1 XRE/MutR family transcriptional regulator -
  LLNCDO1820_RS11675 (LLNCDO1820_11670) ruvB 2288804..2289805 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  LLNCDO1820_RS11680 (LLNCDO1820_11675) ruvA 2289931..2290524 (-) 594 WP_003131995.1 Holliday junction branch migration protein RuvA Machinery gene
  LLNCDO1820_RS11685 (LLNCDO1820_11680) hexB 2290637..2292607 (-) 1971 WP_031297070.1 DNA mismatch repair endonuclease MutL Machinery gene
  LLNCDO1820_RS11690 (LLNCDO1820_11685) - 2292736..2293431 (-) 696 WP_010906384.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21166.73 Da        Isoelectric Point: 5.8174

>NTDB_id=735233 LLNCDO1820_RS11680 WP_003131995.1 2289931..2290524(-) (ruvA) [Lactococcus lactis subsp. lactis strain NCDO1820]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=735233 LLNCDO1820_RS11680 WP_003131995.1 2289931..2290524(-) (ruvA) [Lactococcus lactis subsp. lactis strain NCDO1820]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTGCAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CDL2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462