Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   N7E57_RS10290 Genome accession   NZ_CP104875
Coordinates   2227371..2228480 (-) Length   369 a.a.
NCBI ID   WP_254307093.1    Uniprot ID   -
Organism   Elizabethkingia anophelis strain C08     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2222371..2233480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7E57_RS10265 (N7E57_10265) - 2223634..2224365 (+) 732 WP_254307091.1 DNA alkylation repair protein -
  N7E57_RS10270 (N7E57_10270) - 2224362..2224742 (-) 381 WP_021347637.1 group III truncated hemoglobin -
  N7E57_RS10275 (N7E57_10275) - 2224839..2225330 (+) 492 WP_021347638.1 YkgJ family cysteine cluster protein -
  N7E57_RS10280 (N7E57_10280) - 2225457..2225732 (+) 276 WP_254307092.1 hypothetical protein -
  N7E57_RS10285 (N7E57_10285) gdhA 2225821..2227185 (-) 1365 WP_009086437.1 NADP-specific glutamate dehydrogenase -
  N7E57_RS10290 (N7E57_10290) dprA 2227371..2228480 (-) 1110 WP_254307093.1 DNA-processing protein DprA Machinery gene
  N7E57_RS10295 (N7E57_10295) - 2228518..2229285 (-) 768 WP_009086441.1 rhomboid family intramembrane serine protease -
  N7E57_RS10300 (N7E57_10300) - 2229453..2230574 (+) 1122 WP_009086443.1 DUF3078 domain-containing protein -
  N7E57_RS10305 (N7E57_10305) - 2230581..2231258 (-) 678 Protein_2021 ATP-binding protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41251.23 Da        Isoelectric Point: 7.0444

>NTDB_id=733068 N7E57_RS10290 WP_254307093.1 2227371..2228480(-) (dprA) [Elizabethkingia anophelis strain C08]
MFSEEHLYSIALRHCPQIGDLHFKKIVTTIGSAKEAWSLPRRELVKLYGIGNKIVEDIGKDSHLQFAERELEFCYKNNIQ
ILLSHQGNFPELLYQCDDTPAILYQKGKFDHHRTNISIVGTRKSSKYGKEFITEFLYALKDNNIQTISGLAIGTDTCAHE
ESLKNNIPTTAILAHGFHILYPNTNRKLADKLLENGGCLFTEFYSSQPPIRESFIQRNRIIAGISPSTIITETAYGGGSV
STANFASIYNREVLALPGSVNDKYSQGCNLLISQNKARIIVSISDTIDYLGLVTKPVEQLPLFHKKEILASLTSDQQLIL
SAITDSPNINPDEIAEKVSLPIYKILPIILDLELLGYIKASSGRQYFPS

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=733068 N7E57_RS10290 WP_254307093.1 2227371..2228480(-) (dprA) [Elizabethkingia anophelis strain C08]
ATGTTTTCCGAAGAACATCTTTATTCCATAGCACTAAGACATTGCCCGCAAATCGGTGATTTACACTTCAAGAAAATAGT
TACCACAATTGGTTCAGCAAAAGAAGCTTGGAGCCTTCCCCGACGTGAACTTGTCAAATTGTATGGTATCGGAAACAAAA
TAGTGGAAGACATAGGAAAAGATTCCCATTTACAATTTGCAGAAAGAGAACTAGAGTTCTGCTATAAGAATAACATTCAG
ATCTTACTTTCTCATCAGGGAAATTTCCCGGAATTATTATATCAGTGTGATGACACACCAGCTATACTCTATCAGAAAGG
AAAATTTGACCACCACAGGACAAATATTAGTATAGTAGGTACAAGGAAAAGTTCGAAGTACGGAAAAGAGTTTATTACCG
AATTTCTGTATGCTCTAAAAGATAACAATATCCAGACAATTAGCGGACTCGCTATTGGTACAGATACTTGCGCACATGAA
GAATCTCTAAAAAACAATATTCCGACAACTGCAATACTCGCACATGGTTTTCATATACTGTATCCCAATACAAACAGAAA
GTTAGCCGACAAATTATTGGAAAATGGAGGATGTCTTTTTACTGAATTCTATTCATCACAGCCACCGATAAGAGAAAGCT
TTATCCAAAGAAACAGAATTATTGCTGGTATATCGCCCTCCACAATCATAACAGAAACGGCTTATGGCGGAGGATCTGTA
AGTACAGCCAACTTTGCCAGCATATATAACCGCGAAGTACTTGCGCTCCCAGGCTCTGTCAATGACAAATACAGCCAAGG
CTGCAACCTTTTAATTTCGCAAAACAAAGCAAGAATTATCGTTTCCATTTCTGACACGATTGACTATCTGGGCCTTGTTA
CCAAGCCTGTGGAACAGCTCCCCTTATTCCATAAAAAAGAAATCCTTGCGAGCCTTACATCAGACCAACAACTGATTCTA
TCTGCTATTACGGATTCCCCTAACATAAATCCTGATGAAATTGCCGAAAAAGTTTCTCTCCCCATTTACAAAATTCTTCC
CATAATATTAGATCTGGAACTTTTGGGGTACATTAAAGCCTCTTCCGGGAGACAATATTTCCCAAGCTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)

DprA winged helix domain (DprA_WH)

(309-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

51.913

99.187

0.515