Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GDM11_RS05535 Genome accession   NZ_AP019684
Coordinates   1253511..1254905 (-) Length   464 a.a.
NCBI ID   WP_012437607.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain MAFF302021     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248511..1259905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDM11_RS05515 (Xcc3_10890) - 1249133..1249762 (+) 630 WP_012437604.1 hypothetical protein -
  GDM11_RS23760 - 1249732..1251326 (+) 1595 Protein_1033 spermidine synthase -
  GDM11_RS05530 (Xcc3_10920) pilB 1251361..1253094 (+) 1734 WP_012437606.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GDM11_RS05535 (Xcc3_10930) pilR 1253511..1254905 (-) 1395 WP_012437607.1 sigma-54-dependent transcriptional regulator Regulator
  GDM11_RS05540 (Xcc3_10940) - 1255114..1256724 (-) 1611 WP_012437608.1 sensor histidine kinase -
  GDM11_RS05545 (Xcc3_10950) sucC 1256958..1258127 (+) 1170 WP_012437609.1 ADP-forming succinate--CoA ligase subunit beta -
  GDM11_RS05550 (Xcc3_10960) sucD 1258152..1259027 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  GDM11_RS05555 (Xcc3_10970) - 1259131..1259541 (+) 411 WP_029628876.1 CopG family ribbon-helix-helix protein -
  GDM11_RS05560 (Xcc3_10980) - 1259545..1259847 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50253.62 Da        Isoelectric Point: 6.3587

>NTDB_id=73222 GDM11_RS05535 WP_012437607.1 1253511..1254905(-) (pilR) [Xanthomonas campestris pv. campestris strain MAFF302021]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=73222 GDM11_RS05535 WP_012437607.1 1253511..1254905(-) (pilR) [Xanthomonas campestris pv. campestris strain MAFF302021]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAAAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTTCCACCGCTGCGCGAGCGCAGTGGCGATCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCGGCTTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAACTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment