Detailed information NTG0732048

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N5056_RS14830
• Genome accession: NZ_CP104757
• Coordinates: 3314441..3315286 (-)
• Length: 281 a.a.
• NCBI ID: WP_181829030.1
• Uniprot ID: -
• Organism: Pectobacterium aroidearum strain QJ021
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3309441..3320286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N5056_RS14805 (N5056_14805)	-	3309496..3310266 (-)	771	WP_181829026.1	ABC transporter ATP-binding protein	-
N5056_RS14810 (N5056_14810)	-	3310268..3311305 (-)	1038	WP_181838176.1	iron ABC transporter permease	-
N5056_RS14815 (N5056_14815)	-	3311302..3312366 (-)	1065	WP_181829028.1	ABC transporter substrate-binding protein	-
N5056_RS14820 (N5056_14820)	-	3312842..3313867 (+)	1026	WP_181829029.1	LLM class flavin-dependent oxidoreductase	-
N5056_RS14825 (N5056_14825)	ypdK	3314224..3314298 (+)	75	WP_099606229.1	membrane protein YpdK	-
N5056_RS14830 (N5056_14830)	pilD	3314441..3315286 (-)	846	WP_181829030.1	A24 family peptidase	Machinery gene
N5056_RS14835 (N5056_14835)	-	3315394..3316140 (-)	747	WP_015841039.1	type II secretion system protein N	-
N5056_RS14840 (N5056_14840)	gspM	3316130..3316624 (-)	495	WP_181829031.1	type II secretion system protein GspM	-
N5056_RS14845 (N5056_14845)	gspL	3316621..3317898 (-)	1278	WP_181829032.1	type II secretion system protein GspL	-
N5056_RS14850 (N5056_14850)	gspK	3317895..3318881 (-)	987	WP_015841042.1	type II secretion system minor pseudopilin GspK	-
N5056_RS14855 (N5056_14855)	gspJ	3318878..3319528 (-)	651	WP_181829033.1	type II secretion system minor pseudopilin GspJ	-
N5056_RS14860 (N5056_14860)	gspI	3319528..3319893 (-)	366	WP_015841044.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31261.37 Da
• Isoelectric Point: 7.1428

>NTDB_id=732048 N5056_RS14830 WP_181829030.1 3314441..3315286(-) (pilD) [Pectobacterium aroidearum strain QJ021]
MDDLREFALVFPAWWYGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELQTGVTDVEHVTSYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQPVSVQYPLVEVITMLAFLVAGLLWLPGIALCGALILLSFLVVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVPLRDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGVRKEDTAKPLAFGPWLAIGGVFGVIMNGLYL

Nucleotide

• Length: 846 bp

>NTDB_id=732048 N5056_RS14830 WP_181829030.1 3314441..3315286(-) (pilD) [Pectobacterium aroidearum strain QJ021]
GTGGACGATTTAAGGGAATTCGCACTGGTATTTCCGGCATGGTGGTATGGTGCGCTGGGCGTATTGGGCTTGATTGTTGG
CAGTTTTCTGAACGTCGTGATTTACCGCCTGCCGATTATGTTAGAACGCCGCTGGCGGCAGGACATCGAACTGCAAACGG
GTGTGACCGATGTCGAGCATGTGACGAGTTACAACCTGTGTTGGCCGCCTTCGTCTTGCCCGCACTGTCAGCAGGCGATT
GCGGTGAAAGATAACATCCCGTTATTCAGCTGGCTGTGGCTGCGCGGCCGCTCCCGCTGCTGTCATCAGCCAGTGTCTGT
GCAGTATCCGCTGGTGGAAGTCATTACGATGCTGGCTTTTCTGGTCGCAGGGTTACTGTGGTTGCCCGGCATAGCGTTAT
GCGGGGCGCTGATTCTGCTGTCCTTTCTGGTGGTTTTGACCGTCATTGATATAAAAACGTTACTGCTGCCAGATGTGCTT
ACGCTTTCACTCTTGTGGATGGGACTGCTGTTTAATCTGTCGGAGACCTTTGTCCCATTACGCGATGCCGTAGTAGGCGC
GATGGCGGGCTATTTGTCCCTGTGGCTACTTTATTGGGTATTTAAATATGCCACAGGCAAAGAAGCGCTAGGGTATGGTG
ATTTTAAGTTACTCGCCGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTCTTGGTGGCGGCGCTGAGC
GGGCTGGTCGTTACTCTCATCTGGCGCGGGGTGCGTAAAGAAGATACGGCTAAACCGTTGGCCTTTGGCCCTTGGCTGGC
GATTGGCGGCGTGTTCGGTGTGATAATGAACGGACTCTATCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.741	96.085	0.488
pilD	Neisseria gonorrhoeae MS11	49.805	91.459	0.456
pilD	Vibrio campbellii strain DS40M4	46.85	90.391	0.423
pilD	Acinetobacter baumannii D1279779	42.701	97.509	0.416
pilD	Acinetobacter nosocomialis M2	42.701	97.509	0.416