Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   N5P16_RS04810 Genome accession   NZ_CP104734
Coordinates   1039902..1040288 (+) Length   128 a.a.
NCBI ID   WP_004924483.1    Uniprot ID   -
Organism   Acinetobacter baylyi strain JAT2044     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1034902..1045288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P16_RS04795 (N5P16_04795) - 1035882..1038188 (+) 2307 WP_004924472.1 RelA/SpoT family protein -
  N5P16_RS04800 (N5P16_04800) - 1038235..1039017 (-) 783 WP_004924478.1 SDR family oxidoreductase -
  N5P16_RS04805 (N5P16_04805) mazG 1039131..1039898 (+) 768 WP_004924480.1 nucleoside triphosphate pyrophosphohydrolase -
  N5P16_RS04810 (N5P16_04810) comEA 1039902..1040288 (+) 387 WP_004924483.1 ComEA family DNA-binding protein Machinery gene
  N5P16_RS04815 (N5P16_04815) pcnB 1040413..1041870 (+) 1458 WP_004924487.1 polynucleotide adenylyltransferase PcnB -
  N5P16_RS04820 (N5P16_04820) folK 1041867..1042355 (+) 489 WP_004924489.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  N5P16_RS04825 (N5P16_04825) panB 1042393..1043202 (+) 810 WP_004924492.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  N5P16_RS04830 (N5P16_04830) panC 1043206..1044051 (+) 846 WP_004924494.1 pantoate--beta-alanine ligase -
  N5P16_RS04835 (N5P16_04835) rapZ 1044073..1044924 (+) 852 WP_004924498.1 RNase adapter RapZ -
  N5P16_RS04840 (N5P16_04840) - 1044921..1045190 (+) 270 WP_004924499.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14530.56 Da        Isoelectric Point: 10.4737

>NTDB_id=731699 N5P16_RS04810 WP_004924483.1 1039902..1040288(+) (comEA) [Acinetobacter baylyi strain JAT2044]
MSIRHFFTFFWATLLTLFSMQIVFAQGFDQQYDAWKTQQKAHDTRLNSSASHHSLSKPTQQSGTGVKVNINSATAKELQQ
LHGVGEKKALAIVEYRQQYGKFASVDDLQKVKGIGPKFIEKNRDRLAI

Nucleotide


Download         Length: 387 bp        

>NTDB_id=731699 N5P16_RS04810 WP_004924483.1 1039902..1040288(+) (comEA) [Acinetobacter baylyi strain JAT2044]
ATGTCAATACGTCATTTTTTTACATTTTTTTGGGCGACATTGCTTACACTTTTTTCTATGCAAATTGTTTTTGCACAAGG
GTTTGATCAACAATATGATGCTTGGAAAACACAGCAAAAAGCACATGATACCCGTTTAAACTCATCTGCTAGTCATCATT
CCCTGTCTAAACCGACACAGCAATCTGGCACTGGGGTGAAAGTCAATATTAACTCCGCAACGGCCAAAGAATTACAGCAG
TTGCATGGGGTGGGAGAGAAAAAAGCACTCGCCATCGTTGAATATCGTCAGCAGTATGGCAAGTTTGCGTCTGTAGATGA
TCTACAGAAAGTAAAAGGAATTGGCCCTAAATTTATAGAAAAGAACCGAGACCGTTTAGCCATTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(65-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baylyi ADP1

100

100

1
  comEA Acinetobacter baumannii strain A118

43.511

100

0.445
  comEA Acinetobacter baumannii D1279779

43.511

100

0.445