Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   N5E84_RS07345 Genome accession   NZ_CP104554
Coordinates   1575927..1576226 (-) Length   99 a.a.
NCBI ID   WP_017044597.1    Uniprot ID   A0A233HCF5
Organism   Vibrio sp. J502     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1570927..1581226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS07320 (N5E84_07320) lapB 1571343..1572512 (-) 1170 WP_026028046.1 lipopolysaccharide assembly protein LapB -
  N5E84_RS07325 (N5E84_07325) - 1572532..1572807 (-) 276 WP_017044598.1 LapA family protein -
  N5E84_RS07330 (N5E84_07330) ihfB 1572949..1573233 (-) 285 WP_010317449.1 integration host factor subunit beta -
  N5E84_RS07335 (N5E84_07335) rpsA 1573309..1574979 (-) 1671 WP_013857179.1 30S ribosomal protein S1 -
  N5E84_RS07340 (N5E84_07340) cmk 1575083..1575763 (-) 681 WP_013857180.1 (d)CMP kinase -
  N5E84_RS07345 (N5E84_07345) comEA 1575927..1576226 (-) 300 WP_017044597.1 ComEA family DNA-binding protein Machinery gene
  N5E84_RS07350 (N5E84_07350) ppiD 1576363..1578222 (-) 1860 WP_019282002.1 peptidylprolyl isomerase -
  N5E84_RS07355 (N5E84_07355) - 1578380..1578652 (-) 273 WP_026027116.1 HU family DNA-binding protein -
  N5E84_RS07360 (N5E84_07360) lon 1578848..1581199 (-) 2352 WP_013857184.1 endopeptidase La -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10776.69 Da        Isoelectric Point: 9.6909

>NTDB_id=730430 N5E84_RS07345 WP_017044597.1 1575927..1576226(-) (comEA) [Vibrio sp. J502]
MKLKTKLGLLLLSIVLPLSPTLAEEKVVETHQGIEITVNINQASAEEIATLLKGIGLKKAQAIVEYRQQNGDFKTKEDLS
LVKGIGAATVRQNAERIIL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=730430 N5E84_RS07345 WP_017044597.1 1575927..1576226(-) (comEA) [Vibrio sp. J502]
ATGAAATTGAAAACAAAACTCGGGTTGTTACTTCTAAGTATCGTATTGCCTCTTTCACCGACATTAGCAGAAGAAAAGGT
GGTAGAAACGCACCAAGGCATTGAAATTACGGTTAATATAAATCAGGCTTCCGCTGAGGAAATTGCTACTTTGTTGAAAG
GTATTGGACTTAAAAAAGCACAAGCGATTGTTGAATATCGTCAACAAAATGGCGATTTTAAAACCAAAGAAGATCTGAGC
TTGGTGAAAGGCATTGGTGCCGCTACTGTCAGGCAAAACGCTGAGCGTATCATTTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A233HCF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

60.194

100

0.626
  comEA Vibrio cholerae strain A1552

60.194

100

0.626
  comEA Vibrio campbellii strain DS40M4

59.184

98.99

0.586
  comEA Vibrio parahaemolyticus RIMD 2210633

60

90.909

0.545
  comE1/comEA Haemophilus influenzae Rd KW20

40.179

100

0.455
  comEA/comE1 Glaesserella parasuis strain SC1401

40.909

100

0.455
  comEA Legionella pneumophila str. Paris

36.735

98.99

0.364
  comEA Legionella pneumophila strain ERS1305867

36.735

98.99

0.364