Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NQS37_RS13780 Genome accession   NZ_CP104498
Coordinates   2904126..2906669 (-) Length   847 a.a.
NCBI ID   WP_021154898.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain Sw698     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2899126..2911669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQS37_RS13760 (NQS37_13760) - 2899632..2900546 (-) 915 WP_028852903.1 peptidase -
  NQS37_RS13765 (NQS37_13765) - 2900630..2901466 (-) 837 WP_016725806.1 transglutaminase family protein -
  NQS37_RS13770 (NQS37_13770) - 2901524..2902474 (-) 951 WP_011001072.1 alpha-E domain-containing protein -
  NQS37_RS13775 (NQS37_13775) - 2902537..2904018 (-) 1482 WP_016721677.1 circularly permuted type 2 ATP-grasp protein -
  NQS37_RS13780 (NQS37_13780) comA 2904126..2906669 (-) 2544 WP_021154898.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NQS37_RS13785 (NQS37_13785) - 2906679..2907494 (-) 816 WP_016725802.1 TatD family hydrolase -
  NQS37_RS13790 (NQS37_13790) lolD 2907523..2908257 (-) 735 WP_011001068.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NQS37_RS13795 (NQS37_13795) - 2908250..2909500 (-) 1251 WP_011001067.1 lipoprotein-releasing ABC transporter permease subunit -
  NQS37_RS13800 (NQS37_13800) - 2909573..2910652 (+) 1080 WP_020831663.1 Regulatory protein, RpfE type -

Sequence

Protein


Download         Length: 847 a.a.        Molecular weight: 90793.59 Da        Isoelectric Point: 10.5253

>NTDB_id=730077 NQS37_RS13780 WP_021154898.1 2904126..2906669(-) (comA) [Ralstonia pseudosolanacearum strain Sw698]
MRALLIGFVAGCMALQTRPALAPVWQPALLGLACLLAMALLRRGARLPRLVPVMAALVAACAGFGWSDWRAQQRLSVVLA
PAWEGKDIRATGVVAELPEVTEDATRFLFRIESSDAGDAVPPRVRLSWYGLRSWHERQREAEAATDRRAGIPDLQPGQRW
QLTLRLKRPHSLMNPGGFDGEYAMLADDVRAAGYVYTGKRARNALMGEADAGSGVGLRVERWRAAVRRHLLAALPEARYA
PVIVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFGALWMALWRRSFGLARWLRTPLPLRMPAQRAGAVA
AMAAAFAYCLLAGMGVPAQRTLLMLATVAVARLADRSVPVSLSLCWAAALVALVDPWAVMSAGGWLSFGAVAVIFLAARI
VAADARDDGRRPAWPVRAWRGLRGAARVQLAVTFGLLPLTLLLFQQVSVVSAVANALAIPVVSFVTTPLALMGTALPEPW
SQPVLIWAEASFAWLMPWLDALALPGGSVWVAPAAPAWAWGLAVVGVPLLLVPGGYRAWAWRAQGAVLLLPMLLARAPAP
PPGEFRMVAFDIGQGAATLVETAGHRLLFDTGPRQGDLADAADRVIVPYLRGHGVQAIDTLVVSHEDSDHAGGTETVMAG
VPVRTMLASLPPGHRLERQARALGIEPAGCVAGQRWAWDGVAFEILYPVQVPSDRAAVSSNARSCVLRIANARYAAMLAG
DIGRAQEAALIAAEAPERLMADILLVPHHGSRTSSSGAFLDAVSAQVAVFQVGYRNRYGHPHPQVWQRYGARGIERLRTD
ATGAVVIETRGDALAVRTARSMRPRYWSSALEVAALAETTEPTGAQP

Nucleotide


Download         Length: 2544 bp        

>NTDB_id=730077 NQS37_RS13780 WP_021154898.1 2904126..2906669(-) (comA) [Ralstonia pseudosolanacearum strain Sw698]
ATGCGCGCCCTGCTGATCGGCTTCGTCGCGGGGTGCATGGCGCTGCAGACGCGGCCGGCGCTGGCGCCGGTGTGGCAGCC
GGCGCTGCTTGGGCTTGCTTGCCTGCTGGCGATGGCGTTGCTGCGGCGCGGCGCTCGGTTGCCCAGGCTCGTTCCCGTGA
TGGCCGCGCTGGTGGCGGCCTGCGCCGGCTTCGGCTGGAGCGATTGGCGCGCGCAGCAGCGCTTGTCCGTGGTGCTGGCG
CCCGCATGGGAGGGCAAGGACATCCGCGCGACGGGCGTCGTGGCCGAGCTGCCCGAAGTCACCGAGGACGCCACGCGCTT
CCTGTTCCGGATTGAATCCAGCGACGCGGGCGATGCCGTACCGCCGCGCGTGCGGCTGTCGTGGTACGGCCTGCGCAGCT
GGCACGAGCGGCAGCGGGAGGCGGAGGCCGCCACCGATCGCCGCGCCGGCATTCCTGATCTGCAGCCCGGCCAGCGCTGG
CAGCTGACGCTGCGGCTCAAGCGGCCGCACAGCCTGATGAATCCCGGCGGCTTCGATGGCGAATACGCGATGCTTGCCGA
CGATGTCCGTGCCGCGGGCTACGTGTACACGGGCAAACGCGCGCGCAATGCGTTGATGGGCGAAGCCGATGCCGGTTCCG
GTGTTGGGCTCCGTGTCGAGCGCTGGCGCGCCGCGGTGCGGCGGCACCTCCTGGCTGCGCTGCCCGAGGCACGCTACGCG
CCGGTGATCGTCGCGCTGGTGGTGGGCGACCAGAGCGGCATCGCGCAGGCGGATTGGGAGCGCTTCCGCCGCACCGGCAT
CAGCCATCTCGTCAGCATTTCCGGTCTGCACATCACGATGATCGCCGGGCTGTTCGGCGCACTGTGGATGGCGCTGTGGC
GGCGCTCGTTCGGCCTGGCCCGCTGGCTGCGCACACCGCTGCCGCTGCGCATGCCGGCCCAGCGTGCGGGCGCCGTCGCC
GCCATGGCGGCGGCGTTTGCCTATTGCCTGCTGGCGGGGATGGGCGTGCCGGCGCAGCGCACGCTGCTGATGCTCGCGAC
CGTTGCCGTGGCGCGGCTGGCCGATCGCAGCGTGCCGGTCAGCCTGTCGCTGTGCTGGGCGGCGGCCTTGGTGGCGCTGG
TGGACCCGTGGGCGGTCATGTCGGCGGGAGGCTGGCTGTCGTTCGGCGCCGTGGCGGTCATCTTCCTGGCCGCGCGGATC
GTTGCCGCCGATGCGCGGGACGACGGCCGCCGGCCCGCCTGGCCGGTGCGCGCCTGGCGCGGCCTGCGCGGCGCCGCGCG
CGTCCAGCTGGCCGTGACGTTCGGCCTGCTGCCGTTGACCTTGCTGCTGTTCCAGCAGGTCTCGGTGGTGTCGGCCGTGG
CCAACGCGCTGGCGATCCCGGTGGTCAGCTTTGTCACGACGCCGCTGGCGCTGATGGGCACGGCGTTGCCCGAGCCATGG
TCGCAGCCGGTGCTGATATGGGCCGAGGCCAGCTTCGCCTGGCTCATGCCGTGGCTGGATGCGCTGGCGCTGCCCGGCGG
GTCGGTGTGGGTGGCGCCCGCCGCGCCGGCCTGGGCCTGGGGGCTGGCGGTGGTCGGTGTGCCGTTGCTGCTCGTGCCGG
GTGGGTATCGCGCCTGGGCCTGGCGGGCGCAGGGCGCGGTGCTGCTGCTGCCGATGCTGCTGGCACGCGCACCGGCGCCG
CCGCCGGGCGAGTTCCGCATGGTCGCATTCGACATCGGCCAGGGCGCCGCCACGCTGGTCGAGACGGCCGGCCACCGGCT
GCTGTTCGATACCGGTCCCCGCCAAGGCGACCTGGCCGATGCCGCCGATCGCGTGATCGTCCCGTATCTGCGCGGACATG
GGGTGCAGGCCATCGACACGCTGGTGGTCAGCCATGAGGATAGCGATCACGCCGGCGGCACCGAAACGGTGATGGCCGGT
GTGCCGGTGCGCACCATGCTGGCGTCCCTGCCGCCCGGCCACCGGCTGGAGCGGCAGGCCCGCGCGCTCGGCATCGAGCC
CGCCGGCTGCGTGGCCGGGCAGCGCTGGGCATGGGACGGCGTCGCCTTCGAAATCCTGTATCCGGTGCAGGTGCCCTCCG
ATCGGGCGGCCGTGTCCAGCAATGCCCGCAGCTGTGTGCTGCGCATCGCCAACGCGCGCTACGCCGCCATGCTGGCCGGC
GACATCGGCCGCGCCCAGGAAGCGGCGCTGATTGCCGCCGAAGCGCCGGAGCGGCTCATGGCAGATATCTTGCTTGTGCC
CCATCACGGCAGCAGGACGAGCTCCAGCGGCGCGTTCCTGGACGCGGTCTCTGCGCAGGTGGCGGTGTTCCAGGTCGGCT
ACCGCAACCGGTACGGTCATCCGCATCCGCAGGTCTGGCAGCGCTACGGCGCGCGCGGCATCGAGCGGCTGCGCACCGAT
GCCACCGGGGCCGTCGTCATCGAGACGCGCGGCGATGCGCTGGCGGTGCGGACGGCGCGGTCGATGCGGCCGCGCTACTG
GTCCTCGGCGCTGGAGGTGGCCGCCCTGGCAGAGACCACGGAGCCCACGGGCGCGCAGCCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(246-532)

Beta-lactamase superfamily domain (Lactamase_B_2)

(585-745)

Domain of unknown function (DUF4131) (DUF4131)

(24-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

99.528

100

0.995