Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NQS35_RS13560 Genome accession   NZ_CP104494
Coordinates   2834261..2835526 (+) Length   421 a.a.
NCBI ID   WP_011002732.1    Uniprot ID   A0A223GQI2
Organism   Ralstonia pseudosolanacearum strain Cw717     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2829261..2840526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NQS35_RS13540 (NQS35_13500) ispB 2829708..2830676 (+) 969 WP_011002729.1 octaprenyl diphosphate synthase -
  NQS35_RS13550 (NQS35_13510) - 2830964..2832241 (+) 1278 WP_016723792.1 HlyC/CorC family transporter -
  NQS35_RS13555 (NQS35_13515) pilF 2832489..2834216 (+) 1728 WP_016723793.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NQS35_RS13560 (NQS35_13520) pilC 2834261..2835526 (+) 1266 WP_011002732.1 type II secretion system F family protein Machinery gene
  NQS35_RS13565 (NQS35_13525) - 2835529..2836410 (+) 882 WP_029240316.1 prepilin peptidase -
  NQS35_RS13570 (NQS35_13530) coaE 2836423..2837037 (+) 615 WP_011002734.1 dephospho-CoA kinase -
  NQS35_RS13575 (NQS35_13535) zapD 2837155..2837913 (+) 759 WP_016723794.1 cell division protein ZapD -
  NQS35_RS13580 (NQS35_13540) yacG 2837924..2838139 (+) 216 WP_011002736.1 DNA gyrase inhibitor YacG -
  NQS35_RS13585 (NQS35_13545) - 2838132..2838593 (-) 462 WP_023470258.1 NUDIX domain-containing protein -
  NQS35_RS13590 (NQS35_13550) - 2838571..2839455 (-) 885 WP_011002738.1 ATP-binding protein -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46569.86 Da        Isoelectric Point: 10.3648

>NTDB_id=730039 NQS35_RS13560 WP_011002732.1 2834261..2835526(+) (pilC) [Ralstonia pseudosolanacearum strain Cw717]
MATRAPTANRSAAASARKTAATKAPTQYIFEWEGKDRKGKIFKGEMRAESITEVNAVLRKQGLSITKSKRRRAARGKKIV
PKDIAYFTRQLSTMLKAGVPLLQSVDIIARGHANPNFTQLLTEIRVDIESGSSMAQAFRRHPQHFDSLYCNLIDAGEQGG
ILDALLERLSMYMEKSIALKAQIKSAMIYPISVLTVAFLVTVVLMIFVVPAFKNVFASFGATLPAPTLVVMGISDFFVKW
WYIIIFTPIVGIFLYVRAFKRSEKVQRNTHKAILKMPIFGSIIRKATIARWTRTLATMFSAGTPLVESMESVAGAAGNWV
YYDATMEIQQAVRIGTSLTNAMQATHVFDNMVLQMTQIGEESGALDNMLLKVAEFYEREVDDAVANISALIEPLIIVILG
VLIGGMVVAMYLPIFKLGQVV

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=730039 NQS35_RS13560 WP_011002732.1 2834261..2835526(+) (pilC) [Ralstonia pseudosolanacearum strain Cw717]
ATGGCCACACGAGCACCGACCGCGAACCGGTCCGCCGCCGCATCGGCACGCAAGACCGCCGCCACGAAGGCGCCCACGCA
GTACATCTTCGAGTGGGAAGGCAAGGACCGCAAAGGCAAGATCTTCAAGGGCGAGATGCGGGCGGAGAGCATCACCGAAG
TCAATGCGGTGCTGCGCAAGCAAGGGCTGTCGATCACCAAGTCCAAGCGTCGGCGCGCCGCGCGCGGCAAGAAGATCGTA
CCCAAGGACATCGCCTACTTCACGCGCCAGCTGTCGACCATGCTGAAAGCGGGCGTGCCGCTGCTGCAATCGGTCGACAT
CATCGCGCGCGGGCACGCCAACCCGAACTTCACCCAGCTGCTGACGGAAATCCGTGTCGACATCGAGTCGGGCAGCAGCA
TGGCGCAGGCCTTCCGCCGCCATCCGCAGCACTTCGATTCGCTGTACTGCAACCTGATCGACGCCGGTGAGCAGGGCGGT
ATTCTCGACGCGCTGCTCGAGCGGCTGTCGATGTACATGGAAAAGTCGATCGCGCTGAAGGCGCAGATCAAGTCGGCCAT
GATCTATCCGATCTCGGTGCTGACGGTGGCTTTCCTGGTCACGGTGGTGCTGATGATCTTCGTGGTGCCGGCGTTCAAGA
ACGTGTTCGCCAGCTTCGGCGCCACGCTGCCGGCTCCGACGCTGGTGGTGATGGGCATTTCGGACTTCTTCGTGAAGTGG
TGGTACATCATCATCTTCACGCCCATCGTTGGGATCTTCCTGTATGTGCGGGCCTTCAAGCGCTCGGAGAAGGTGCAGCG
CAACACGCACAAGGCCATCCTGAAGATGCCGATCTTCGGCAGCATCATCCGCAAGGCCACCATCGCGCGCTGGACGCGTA
CGCTGGCAACCATGTTCTCGGCCGGGACACCGCTGGTGGAGTCGATGGAATCCGTCGCGGGCGCCGCCGGCAACTGGGTC
TACTATGACGCCACCATGGAGATCCAGCAGGCGGTGCGCATCGGTACCAGCCTCACCAACGCCATGCAGGCGACCCATGT
GTTCGACAACATGGTGCTGCAGATGACGCAGATCGGCGAGGAATCCGGCGCGCTGGACAACATGCTGCTGAAGGTGGCCG
AATTCTACGAGCGCGAGGTCGATGACGCGGTGGCCAACATCTCCGCCCTGATCGAGCCGCTCATCATCGTGATCCTGGGC
GTGCTGATCGGGGGCATGGTGGTTGCCATGTACCTGCCGATCTTCAAGCTGGGCCAAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(291-413)

Type II secretion system (T2SS), protein F (T2SSF)

(87-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223GQI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

50.248

95.962

0.482
  pilG Neisseria gonorrhoeae MS11

50.125

94.774

0.475
  pilG Neisseria meningitidis 44/76-A

49.875

94.774

0.473
  pilC Acinetobacter baumannii D1279779

47.912

96.675

0.463
  pilC Acinetobacter baylyi ADP1

46.683

96.675

0.451
  pilC Legionella pneumophila strain ERS1305867

45.813

96.437

0.442
  pilC Vibrio cholerae strain A1552

40

95.012

0.38
  pilC Vibrio campbellii strain DS40M4

39.506

96.2

0.38