Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   N4S13_RS00825 Genome accession   NZ_CP104392
Coordinates   166799..168046 (+) Length   415 a.a.
NCBI ID   WP_010747261.1    Uniprot ID   R2QRK8
Organism   Enterococcus raffinosus strain HG-5     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 161799..173046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4S13_RS00805 (N4S13_00805) yfmH 162835..164127 (+) 1293 WP_010747265.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  N4S13_RS00810 (N4S13_00810) ymfI 164129..164854 (+) 726 WP_010747264.1 elongation factor P 5-aminopentanone reductase -
  N4S13_RS00815 (N4S13_00815) - 165136..166002 (+) 867 WP_010747263.1 RodZ domain-containing protein -
  N4S13_RS00820 (N4S13_00820) pgsA 166037..166618 (+) 582 WP_010747262.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N4S13_RS00825 (N4S13_00825) cinA 166799..168046 (+) 1248 WP_010747261.1 competence/damage-inducible protein A Machinery gene
  N4S13_RS00830 (N4S13_00830) recA 168170..169219 (+) 1050 WP_010747260.1 recombinase RecA Machinery gene
  N4S13_RS00835 (N4S13_00835) rny 169463..171019 (+) 1557 WP_010747259.1 ribonuclease Y -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45279.55 Da        Isoelectric Point: 4.3814

>NTDB_id=729466 N4S13_RS00825 WP_010747261.1 166799..168046(+) (cinA) [Enterococcus raffinosus strain HG-5]
MRAEIIAVGTELLLGQVVNTNATFLSEKLADMGIEVYFHTVVGDNPQRLEELLQLADTRSELIILCGGLGPTDDDLTKNV
LADHVGVPLVQNTEGLEALNAFFAQRQSTMTPNNLRQIETLQDGIPLPNRTGLAIGCLYKGEKNNYILLPGPPSELKPMF
LEQARPLLEKEFPTTEKLTSRVLRFFGIGESKLVTDLAEMIEQQSNPTIAPYAKPNEVTLRITAKTEDELSANALLDQTE
AEIMAKVGEFFYGYGEENSLVEVVVDLLKENNLSITAAESLTAGEFQATLGTISGVSEVFPGGFVTYSKETKVSFLGIDS
ALLDRVGVVSEECAKEMAEAALRLAGTDYALSFTGVAGPDELEGKPKGTVYIGLAQKEGETLITENHFTRDRSYVRHSSV
MKGLDMLRRAILNKN

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=729466 N4S13_RS00825 WP_010747261.1 166799..168046(+) (cinA) [Enterococcus raffinosus strain HG-5]
ATGAGAGCAGAAATTATTGCCGTAGGTACGGAACTTTTATTAGGACAGGTCGTAAATACAAATGCGACATTCTTATCAGA
GAAATTAGCGGATATGGGGATCGAGGTTTATTTCCACACAGTCGTAGGGGATAATCCTCAACGATTGGAAGAGTTGCTTC
AATTAGCAGATACTCGCAGTGAATTGATCATTTTATGTGGTGGTTTGGGACCGACAGATGATGATTTAACCAAAAATGTA
TTGGCGGATCATGTAGGGGTACCACTGGTTCAAAATACAGAAGGGCTAGAAGCATTAAATGCGTTCTTTGCGCAGCGTCA
AAGCACTATGACGCCGAATAACTTAAGGCAAATCGAAACTCTCCAAGATGGCATTCCTTTACCGAATCGGACAGGACTAG
CAATCGGCTGCTTATATAAAGGGGAGAAAAACAATTACATTCTACTACCAGGGCCACCTAGTGAATTGAAGCCGATGTTT
TTGGAGCAAGCACGTCCATTACTAGAAAAAGAATTTCCAACAACGGAAAAATTAACTTCACGTGTGTTACGTTTCTTCGG
AATCGGAGAATCAAAACTAGTGACAGATTTGGCAGAAATGATCGAACAGCAATCAAATCCAACGATTGCACCTTATGCGA
AGCCGAACGAAGTCACGTTGCGGATCACTGCGAAGACAGAGGATGAGCTTTCAGCCAATGCTCTATTGGATCAGACAGAG
GCTGAAATCATGGCTAAAGTCGGCGAATTCTTTTACGGCTATGGAGAAGAAAATAGCTTAGTTGAAGTCGTTGTTGATCT
ACTAAAGGAAAACAATTTAAGTATCACGGCGGCAGAAAGTTTGACTGCTGGGGAGTTCCAAGCAACGCTGGGGACAATTT
CAGGTGTTTCTGAAGTCTTTCCTGGAGGCTTTGTCACCTATTCTAAGGAAACAAAAGTAAGCTTCTTAGGGATCGATTCT
GCGCTGCTAGACCGTGTTGGTGTAGTTAGTGAAGAATGTGCAAAAGAGATGGCAGAAGCTGCACTGCGTCTTGCTGGAAC
AGATTATGCATTGTCCTTTACAGGTGTGGCTGGTCCTGATGAGTTAGAAGGAAAGCCGAAGGGAACAGTCTATATCGGAT
TGGCGCAAAAAGAGGGCGAGACCCTGATTACAGAAAATCATTTTACCCGTGACCGTTCGTATGTTCGCCATAGTTCAGTC
ATGAAGGGCTTAGATATGCTGCGAAGAGCAATTCTAAACAAAAATTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R2QRK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae Rx1

53.444

100

0.542
  cinA Streptococcus pneumoniae R6

53.444

100

0.542
  cinA Streptococcus pneumoniae D39

53.444

100

0.542
  cinA Streptococcus pneumoniae TIGR4

53.444

100

0.542
  cinA Streptococcus mitis SK321

53.207

100

0.54
  cinA Streptococcus mitis NCTC 12261

53.207

100

0.54
  cinA Streptococcus mutans UA159

52.163

100

0.523
  cinA Bacillus subtilis subsp. subtilis str. 168

47.942

99.518

0.477
  cinA Streptococcus suis isolate S10

42.788

100

0.429