Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N1707_RS08240 Genome accession   NZ_CP104112
Coordinates   1710760..1711389 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain USDA-ARS-USMARC-51688     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1705760..1716389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N1707_RS08220 (N1707_08220) ycbZ 1706161..1707921 (-) 1761 WP_000156518.1 Lon protease family protein -
  N1707_RS08225 (N1707_08225) matP 1708107..1708559 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N1707_RS08230 (N1707_08230) ompA 1708635..1709675 (-) 1041 WP_000750416.1 porin OmpA -
  N1707_RS08235 (N1707_08235) sulA 1710032..1710541 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  N1707_RS08240 (N1707_08240) sxy/tfoX 1710760..1711389 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N1707_RS08245 (N1707_08245) yccS 1711352..1713514 (-) 2163 WP_000875061.1 YccS family putative transporter -
  N1707_RS08250 (N1707_08250) yccF 1713524..1713970 (-) 447 WP_198779543.1 YccF domain-containing protein -
  N1707_RS08255 (N1707_08255) helD 1714093..1716147 (+) 2055 WP_255233249.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=727684 N1707_RS08240 WP_000839153.1 1710760..1711389(+) (sxy/tfoX) [Escherichia coli strain USDA-ARS-USMARC-51688]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=727684 N1707_RS08240 WP_000839153.1 1710760..1711389(+) (sxy/tfoX) [Escherichia coli strain USDA-ARS-USMARC-51688]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1