Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NYR17_RS01050 Genome accession   NZ_CP103950
Coordinates   233892..234998 (-) Length   368 a.a.
NCBI ID   WP_302505727.1    Uniprot ID   -
Organism   Riemerella columbina strain TH22     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 228892..239998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR17_RS01035 (NYR17_01035) - 229671..230507 (-) 837 WP_302505722.1 SDR family oxidoreductase -
  NYR17_RS01040 (NYR17_01040) bioB 231100..232203 (-) 1104 WP_302505724.1 biotin synthase BioB -
  NYR17_RS01045 (NYR17_01045) gdhA 232350..233708 (-) 1359 WP_302505725.1 NADP-specific glutamate dehydrogenase -
  NYR17_RS01050 (NYR17_01050) dprA 233892..234998 (-) 1107 WP_302505727.1 DNA-processing protein DprA Machinery gene
  NYR17_RS01055 (NYR17_01055) - 235038..235415 (-) 378 WP_302505728.1 group III truncated hemoglobin -
  NYR17_RS01060 (NYR17_01060) - 235521..236006 (+) 486 WP_302505730.1 YkgJ family cysteine cluster protein -
  NYR17_RS01065 (NYR17_01065) - 236013..238472 (-) 2460 WP_302505731.1 hypothetical protein -
  NYR17_RS01070 (NYR17_01070) - 238515..239309 (-) 795 WP_302505732.1 DUF2797 domain-containing protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 40744.65 Da        Isoelectric Point: 7.5764

>NTDB_id=726562 NYR17_RS01050 WP_302505727.1 233892..234998(-) (dprA) [Riemerella columbina strain TH22]
MDAEEILYAIALRKSPSVGDVVFNTLVDAVGSAKEVWHLSKNHLRGISGIGKTIAEHIGNEKWLRFAEQELQFCEQHQIK
IRLRHLGELPPLLNECYGAPAILFQKGNYDETATNISIVGTRNATAYGKAFIKDLMEALKSKNIQIISGLALGTDGTAHQ
EALSVQLKTSAVLAHGLHTLYPSKHRQLAQNIIDHGGALFSEFTTDKKPDREHFLQRNRIVAGLSQATIVVESAYAGGSM
STVTFANQYNREVYALPGKINDLYSQGCNRVIFQNKAKNICDIPSLLEDLGLGNQPPRLRELFPKPLPELNEQQKSVYEI
IKNKPQTSLDELAAQLHQNPVKLLPILLDLEILGVISTHSGRQYSTVL

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=726562 NYR17_RS01050 WP_302505727.1 233892..234998(-) (dprA) [Riemerella columbina strain TH22]
ATGGATGCAGAAGAAATTTTATACGCCATTGCCCTTCGGAAAAGCCCCTCGGTGGGCGATGTGGTTTTTAATACATTAGT
AGATGCCGTGGGCTCCGCTAAAGAAGTCTGGCATCTCTCCAAAAATCATCTTAGAGGCATCTCGGGTATCGGCAAAACTA
TTGCAGAGCACATCGGTAACGAGAAATGGCTCCGGTTTGCCGAGCAAGAACTCCAGTTCTGTGAACAGCATCAAATCAAA
ATTAGACTGCGCCATTTGGGCGAACTTCCGCCACTCTTAAATGAATGTTATGGTGCGCCCGCTATCCTCTTTCAAAAAGG
CAACTATGATGAAACCGCCACCAATATTAGCATTGTGGGTACCCGCAACGCCACCGCTTATGGCAAAGCTTTCATCAAAG
ACCTGATGGAGGCTTTGAAATCTAAAAATATACAAATCATCAGCGGGCTGGCACTCGGCACTGATGGCACGGCACACCAA
GAAGCCTTGAGCGTTCAGCTTAAAACCTCCGCCGTTTTAGCCCACGGATTGCACACGCTGTATCCGAGTAAGCATCGGCA
ATTGGCACAAAACATCATAGACCACGGCGGTGCTCTGTTTTCGGAATTTACTACGGATAAAAAGCCCGATAGAGAACATT
TTTTGCAAAGAAATCGGATTGTAGCAGGGCTGTCGCAAGCTACCATTGTGGTGGAAAGCGCCTATGCTGGCGGCTCTATG
AGCACCGTAACCTTCGCCAACCAATATAATAGAGAGGTTTATGCGCTCCCTGGGAAAATTAACGACCTCTATAGCCAAGG
CTGCAACCGTGTGATTTTTCAAAATAAAGCCAAAAACATTTGTGATATTCCTTCATTATTAGAAGATTTGGGGCTGGGCA
ACCAACCGCCTCGGCTAAGGGAATTGTTTCCTAAACCTTTGCCAGAGCTCAATGAACAGCAAAAATCAGTTTACGAAATC
ATCAAAAATAAACCTCAAACCAGCTTAGATGAGTTGGCGGCACAGCTTCATCAAAATCCTGTAAAACTCTTGCCTATTTT
ATTAGATTTGGAAATTTTAGGCGTCATCAGCACCCATTCTGGGAGGCAATATTCCACAGTATTATAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(303-361)

DNA recombination-mediator protein A (DNA_processg_A)

(74-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.85

99.728

0.647