Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   J3989_RS06500 Genome accession   NZ_AP024489
Coordinates   1371690..1372367 (+) Length   225 a.a.
NCBI ID   WP_002243546.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1366690..1377367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS06480 (NMNIID777_12080) leuD 1367495..1368136 (-) 642 WP_002234920.1 3-isopropylmalate dehydratase small subunit -
  J3989_RS06485 (NMNIID777_12090) - 1368198..1368452 (-) 255 WP_002213442.1 hypothetical protein -
  J3989_RS06490 (NMNIID777_12100) leuC 1368549..1369958 (-) 1410 WP_002243547.1 3-isopropylmalate dehydratase large subunit -
  J3989_RS06495 (NMNIID777_12110) gshA 1370218..1371567 (+) 1350 WP_002242727.1 glutamate--cysteine ligase -
  J3989_RS11015 - 1371541..1371663 (-) 123 WP_255294323.1 hypothetical protein -
  J3989_RS06500 (NMNIID777_12120) ysxA/radC 1371690..1372367 (+) 678 WP_002243546.1 DNA repair protein RadC Machinery gene
  J3989_RS06505 (NMNIID777_12130) - 1372440..1373165 (+) 726 WP_002233924.1 epoxyqueuosine reductase QueH -
  J3989_RS11020 - 1373188..1373316 (-) 129 WP_009347251.1 hypothetical protein -
  J3989_RS06510 (NMNIID777_12140) - 1373318..1374598 (+) 1281 WP_002225276.1 CAP domain-containing protein -
  J3989_RS06515 (NMNIID777_12150) hflX 1374603..1375781 (+) 1179 WP_050893043.1 GTPase HflX -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24932.73 Da        Isoelectric Point: 5.7262

>NTDB_id=72652 J3989_RS06500 WP_002243546.1 1371690..1372367(+) (ysxA/radC) [Neisseria meningitidis strain NIID777]
MSIKQWPEGERPREKLLERGAAALSDAELLAILLRVGTRGMSAVDLARYLLQEFGSLGRLMSAEVGKLSAYKGTGTASFT
QFAVVREIGRRILAEELQESIVLSDPDTVADYLRFHLGQEKVEVSVALLLNRQNQLIAVKELSRGTVAENTIYIREIVKL
ALDEYADSLIIAHNHPGGSPEPSQEDIMFTRRLAQAMSLVDVSLLDHFIVTAQTVRSFRQLGLMP

Nucleotide


Download         Length: 678 bp        

>NTDB_id=72652 J3989_RS06500 WP_002243546.1 1371690..1372367(+) (ysxA/radC) [Neisseria meningitidis strain NIID777]
ATGAGCATCAAGCAATGGCCGGAAGGCGAAAGACCCAGGGAAAAGCTGTTGGAACGCGGGGCGGCGGCGTTGAGTGATGC
CGAACTTTTGGCAATCCTGCTGCGCGTCGGCACGCGCGGAATGAGTGCGGTCGATTTGGCGCGTTATTTGCTGCAGGAGT
TCGGCAGTTTGGGGAGGCTGATGAGCGCGGAGGTCGGCAAACTGTCGGCATACAAAGGGACGGGGACGGCAAGTTTCACA
CAGTTTGCCGTGGTCAGGGAAATCGGGCGGCGGATATTGGCGGAAGAATTGCAGGAGAGCATCGTCCTGTCCGATCCGGA
TACGGTGGCCGATTATTTACGCTTTCATTTGGGGCAGGAAAAAGTCGAAGTCAGCGTCGCGCTGCTGCTGAACCGCCAAA
ACCAACTGATTGCGGTCAAAGAGCTGTCGCGCGGTACGGTTGCGGAAAACACGATTTACATCCGCGAAATCGTCAAACTG
GCTTTGGACGAGTATGCCGACAGCCTGATTATCGCGCACAACCATCCGGGCGGCTCGCCCGAACCTTCGCAGGAAGACAT
CATGTTCACAAGGCGGCTGGCACAGGCAATGTCGCTGGTCGATGTGTCGCTGCTCGACCATTTTATCGTAACGGCGCAAA
CCGTCCGTTCGTTCAGGCAGCTCGGGCTGATGCCCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(3-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.719

100

0.382
  radC Haemophilus influenzae Rd KW20

39.906

94.667

0.378

Multiple sequence alignment