Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NYR48_RS00250 Genome accession   NZ_CP103782
Coordinates   45548..45838 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain DA4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40548..50838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR48_RS00210 darA 40565..40894 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  NYR48_RS00215 - 40907..41347 (+) 441 WP_004264730.1 YaaR family protein -
  NYR48_RS00220 holB 41359..42348 (+) 990 WP_259424857.1 DNA polymerase III subunit delta' -
  NYR48_RS00225 ricT 42351..43178 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  NYR48_RS00230 yabA 43193..43552 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  NYR48_RS00235 - 43613..44356 (+) 744 WP_259424858.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NYR48_RS00240 - 44343..44642 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  NYR48_RS00245 rsmI 44617..45498 (+) 882 WP_259424859.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NYR48_RS00250 abrB 45548..45838 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  NYR48_RS00255 metG 46321..48312 (+) 1992 WP_259424860.1 methionine--tRNA ligase -
  NYR48_RS00260 - 48389..49156 (+) 768 WP_259424861.1 TatD family hydrolase -
  NYR48_RS00265 - 49291..50616 (+) 1326 WP_259424862.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=724817 NYR48_RS00250 WP_169510469.1 45548..45838(-) (abrB) [Bacillus velezensis strain DA4]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=724817 NYR48_RS00250 WP_169510469.1 45548..45838(-) (abrB) [Bacillus velezensis strain DA4]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGGGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979