Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | NYR47_RS19465 | Genome accession | NZ_CP103777 |
| Coordinates | 3815483..3816262 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421291.1 | Uniprot ID | A0A1V6LJD3 |
| Organism | Bacillus toyonensis strain DC11 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3790193..3852001 | 3815483..3816262 | within | 0 |
Gene organization within MGE regions
Location: 3790193..3852001
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYR47_RS19355 | - | 3790763..3791662 (-) | 900 | WP_259416108.1 | polysaccharide deacetylase family protein | - |
| NYR47_RS19360 | pnp | 3791814..3793952 (-) | 2139 | WP_000076735.1 | polyribonucleotide nucleotidyltransferase | - |
| NYR47_RS19365 | rpsO | 3794113..3794382 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| NYR47_RS19370 | ribF | 3794483..3795454 (-) | 972 | WP_259416109.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| NYR47_RS19375 | truB | 3795498..3796421 (-) | 924 | WP_259416110.1 | tRNA pseudouridine(55) synthase TruB | - |
| NYR47_RS19380 | rbfA | 3796507..3796863 (-) | 357 | WP_000776439.1 | 30S ribosome-binding factor RbfA | - |
| NYR47_RS19385 | - | 3796879..3797160 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| NYR47_RS19390 | infB | 3797157..3799217 (-) | 2061 | WP_000036352.1 | translation initiation factor IF-2 | - |
| NYR47_RS19395 | - | 3799222..3799533 (-) | 312 | WP_001286525.1 | YlxQ family RNA-binding protein | - |
| NYR47_RS19400 | rnpM | 3799534..3799806 (-) | 273 | WP_000071127.1 | RNase P modulator RnpM | - |
| NYR47_RS19405 | nusA | 3799818..3800924 (-) | 1107 | WP_000102596.1 | transcription termination factor NusA | - |
| NYR47_RS19410 | rimP | 3800942..3801412 (-) | 471 | WP_000359095.1 | ribosome maturation factor RimP | - |
| NYR47_RS19415 | - | 3801746..3806047 (-) | 4302 | WP_000060011.1 | PolC-type DNA polymerase III | - |
| NYR47_RS19420 | - | 3806172..3807872 (-) | 1701 | WP_000814320.1 | proline--tRNA ligase | - |
| NYR47_RS19425 | rseP | 3807982..3809238 (-) | 1257 | WP_001090232.1 | RIP metalloprotease RseP | - |
| NYR47_RS19430 | dxr | 3809256..3810398 (-) | 1143 | WP_259416111.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| NYR47_RS19435 | cdsA | 3810422..3811213 (-) | 792 | WP_000813595.1 | phosphatidate cytidylyltransferase | - |
| NYR47_RS19440 | uppS | 3811231..3812007 (-) | 777 | WP_000971308.1 | isoprenyl transferase | - |
| NYR47_RS19445 | frr | 3812093..3812650 (-) | 558 | WP_000531505.1 | ribosome recycling factor | - |
| NYR47_RS19450 | pyrH | 3812653..3813375 (-) | 723 | WP_000042662.1 | UMP kinase | - |
| NYR47_RS19455 | tsf | 3813442..3814329 (-) | 888 | WP_001018579.1 | translation elongation factor Ts | - |
| NYR47_RS19460 | rpsB | 3814433..3815134 (-) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| NYR47_RS19465 | codY | 3815483..3816262 (-) | 780 | WP_000421291.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| NYR47_RS19470 | hslU | 3816340..3817731 (-) | 1392 | WP_000550076.1 | ATP-dependent protease ATPase subunit HslU | - |
| NYR47_RS19475 | hslV | 3817754..3818296 (-) | 543 | WP_000526274.1 | ATP-dependent protease proteolytic subunit HslV | - |
| NYR47_RS19480 | xerC | 3818339..3819238 (-) | 900 | WP_001101240.1 | tyrosine recombinase XerC | - |
| NYR47_RS19485 | trmFO | 3819304..3820608 (-) | 1305 | WP_259416112.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| NYR47_RS19490 | topA | 3820657..3822735 (-) | 2079 | WP_001286961.1 | type I DNA topoisomerase | - |
| NYR47_RS19495 | dprA | 3822880..3823749 (-) | 870 | WP_259416113.1 | DNA-processing protein DprA | - |
| NYR47_RS19500 | sucD | 3823838..3824740 (-) | 903 | WP_000115185.1 | succinate--CoA ligase subunit alpha | - |
| NYR47_RS19505 | sucC | 3824760..3825920 (-) | 1161 | WP_001020779.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| NYR47_RS19510 | - | 3826115..3826888 (-) | 774 | WP_001171133.1 | ribonuclease HII | - |
| NYR47_RS19515 | ylqF | 3826945..3827835 (-) | 891 | WP_259416114.1 | ribosome biogenesis GTPase YlqF | - |
| NYR47_RS19520 | lepB | 3827856..3828407 (-) | 552 | WP_000712442.1 | signal peptidase I | - |
| NYR47_RS19525 | rplS | 3828509..3828853 (-) | 345 | WP_001186517.1 | 50S ribosomal protein L19 | - |
| NYR47_RS19530 | trmD | 3829000..3829734 (-) | 735 | WP_000686907.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| NYR47_RS19535 | rimM | 3829734..3830249 (-) | 516 | WP_259416115.1 | ribosome maturation factor RimM | - |
| NYR47_RS19540 | - | 3830371..3830598 (-) | 228 | WP_000737399.1 | KH domain-containing protein | - |
| NYR47_RS19545 | rpsP | 3830613..3830885 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| NYR47_RS19550 | ffh | 3830987..3832336 (-) | 1350 | WP_000863463.1 | signal recognition particle protein | - |
| NYR47_RS19555 | - | 3832349..3832681 (-) | 333 | WP_000891061.1 | putative DNA-binding protein | - |
| NYR47_RS19560 | ftsY | 3832815..3833804 (-) | 990 | WP_259416116.1 | signal recognition particle-docking protein FtsY | - |
| NYR47_RS19565 | smc | 3833819..3837388 (-) | 3570 | WP_098158047.1 | chromosome segregation protein SMC | - |
| NYR47_RS19570 | rncS | 3837535..3838272 (-) | 738 | WP_001146877.1 | ribonuclease III | - |
| NYR47_RS19575 | acpP | 3838332..3838565 (-) | 234 | WP_000786062.1 | acyl carrier protein | - |
| NYR47_RS19580 | fabG | 3838635..3839375 (-) | 741 | WP_259416117.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| NYR47_RS19585 | fabD | 3839375..3840319 (-) | 945 | WP_000515915.1 | ACP S-malonyltransferase | - |
| NYR47_RS19590 | plsX | 3840334..3841326 (-) | 993 | WP_000684090.1 | phosphate acyltransferase PlsX | - |
| NYR47_RS19595 | fapR | 3841323..3841916 (-) | 594 | WP_000747351.1 | transcription factor FapR | - |
| NYR47_RS19600 | recG | 3842005..3844053 (-) | 2049 | WP_001006879.1 | ATP-dependent DNA helicase RecG | - |
| NYR47_RS19605 | - | 3844343..3846019 (-) | 1677 | WP_000027119.1 | DAK2 domain-containing protein | - |
| NYR47_RS19610 | - | 3846042..3846404 (-) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| NYR47_RS19615 | rpmB | 3846781..3846969 (+) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| NYR47_RS19620 | spoVM | 3847043..3847123 (-) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| NYR47_RS19625 | - | 3847190..3847870 (-) | 681 | WP_002039429.1 | thiamine diphosphokinase | - |
| NYR47_RS19630 | rpe | 3847971..3848615 (-) | 645 | WP_259416118.1 | ribulose-phosphate 3-epimerase | - |
| NYR47_RS19635 | rsgA | 3848618..3849499 (-) | 882 | WP_001113944.1 | ribosome small subunit-dependent GTPase A | - |
| NYR47_RS19640 | prkC | 3849769..3851742 (-) | 1974 | WP_000904738.1 | serine/threonine protein kinase PrkC | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28788.03 Da Isoelectric Point: 4.7947
>NTDB_id=724793 NYR47_RS19465 WP_000421291.1 3815483..3816262(-) (codY) [Bacillus toyonensis strain DC11]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NVTETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NVTETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=724793 NYR47_RS19465 WP_000421291.1 3815483..3816262(-) (codY) [Bacillus toyonensis strain DC11]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAACGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAATATACGCAAAGCTTATTC
AATGTAACGGAAACATCTTCAAATTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACATTAGTGTTAGCTCGCCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATTTTCGAAGAGTTAAACGGAACAGAAGGTCTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATCACTC
GTTCTGTGATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATCGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTTTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAACGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAATATACGCAAAGCTTATTC
AATGTAACGGAAACATCTTCAAATTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACATTAGTGTTAGCTCGCCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATTTTCGAAGAGTTAAACGGAACAGAAGGTCTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATCACTC
GTTCTGTGATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATCGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTTTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.853 |
100 |
0.819 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.275 |
98.456 |
0.456 |