Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   M5T11_RS15665 Genome accession   NZ_CP103762
Coordinates   3165252..3165881 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 5283     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3160252..3170881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5T11_RS15650 (M5T11_15650) helD 3160494..3162548 (-) 2055 WP_106651909.1 DNA helicase IV -
  M5T11_RS15655 (M5T11_15655) yccF 3162671..3163117 (+) 447 WP_001261235.1 YccF domain-containing protein -
  M5T11_RS15660 (M5T11_15660) yccS 3163127..3165289 (+) 2163 WP_000875041.1 YccS family putative transporter -
  M5T11_RS15665 (M5T11_15665) sxy/tfoX 3165252..3165881 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  M5T11_RS15670 (M5T11_15670) sulA 3166100..3166609 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  M5T11_RS15675 (M5T11_15675) ompA 3166966..3168018 (+) 1053 WP_000750418.1 porin OmpA -
  M5T11_RS15680 (M5T11_15680) matP 3168093..3168545 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  M5T11_RS15685 (M5T11_15685) ycbZ 3168731..3170491 (+) 1761 WP_029701764.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=724567 M5T11_RS15665 WP_000839153.1 3165252..3165881(-) (sxy/tfoX) [Escherichia coli strain 5283]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=724567 M5T11_RS15665 WP_000839153.1 3165252..3165881(-) (sxy/tfoX) [Escherichia coli strain 5283]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1