Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EKN16_RS23545 Genome accession   NZ_AP019308
Coordinates   5347569..5348099 (+) Length   176 a.a.
NCBI ID   WP_125662911.1    Uniprot ID   A0A3G9IYI4
Organism   Paenibacillus baekrokdamisoli strain KCTC 33723     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5342569..5353099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EKN16_RS23505 (Back11_47400) - 5343364..5344533 (+) 1170 WP_125666587.1 aminotransferase class V-fold PLP-dependent enzyme -
  EKN16_RS23510 (Back11_47410) - 5344561..5345052 (+) 492 WP_125662899.1 DUF4446 family protein -
  EKN16_RS23515 (Back11_47420) yyaC 5345027..5345617 (-) 591 WP_125662901.1 spore protease YyaC -
  EKN16_RS23520 (Back11_47430) - 5345815..5346054 (+) 240 WP_125662903.1 DUF3343 domain-containing protein -
  EKN16_RS23525 (Back11_47440) - 5346085..5346300 (+) 216 WP_125662905.1 DUF951 domain-containing protein -
  EKN16_RS23535 (Back11_47450) - 5346828..5347010 (-) 183 WP_125662907.1 YjzC family protein -
  EKN16_RS23540 (Back11_47460) rpsF 5347241..5347525 (+) 285 WP_125662909.1 30S ribosomal protein S6 -
  EKN16_RS23545 (Back11_47470) ssbA 5347569..5348099 (+) 531 WP_125662911.1 single-stranded DNA-binding protein Machinery gene
  EKN16_RS23550 (Back11_47480) rpsR 5348118..5348399 (+) 282 WP_125662913.1 30S ribosomal protein S18 -
  EKN16_RS23555 (Back11_47490) - 5348552..5348905 (-) 354 WP_125662915.1 DUF4870 domain-containing protein -
  EKN16_RS23560 (Back11_47500) - 5349178..5350212 (+) 1035 WP_232015971.1 LCP family protein -
  EKN16_RS23565 (Back11_47510) - 5350296..5350736 (+) 441 WP_125662918.1 CBS domain-containing protein -
  EKN16_RS23570 (Back11_47520) - 5350967..5352997 (+) 2031 WP_232015974.1 amidohydrolase family protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18787.49 Da        Isoelectric Point: 4.8620

>NTDB_id=72354 EKN16_RS23545 WP_125662911.1 5347569..5348099(+) (ssbA) [Paenibacillus baekrokdamisoli strain KCTC 33723]
MLNRVILIGRLTKDPEMRYTPAGVAVTQFTLAVDRPFTSGGQGEREADFIPIVTWRQLAETCANYLRKGRLTAVEGRIQV
RNYENNEGKRVYVTEVIADNVRFLESGNRDGGGSREEGSGSSGGGGNSGQGGNQGGYGGGSQGGGNRSGGTPKNDNRDPF
SDDGRPIDISEDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=72354 EKN16_RS23545 WP_125662911.1 5347569..5348099(+) (ssbA) [Paenibacillus baekrokdamisoli strain KCTC 33723]
ATGTTGAACCGCGTTATTCTCATAGGTAGATTAACGAAGGACCCTGAAATGCGTTATACACCTGCAGGCGTTGCGGTAAC
GCAATTTACGCTCGCAGTGGATCGTCCGTTTACTAGCGGTGGTCAAGGTGAAAGGGAAGCAGATTTCATCCCGATCGTTA
CTTGGCGGCAGCTTGCAGAAACATGTGCTAACTATTTACGCAAGGGCCGTTTAACAGCAGTTGAAGGCCGTATCCAGGTT
CGGAATTATGAGAACAACGAAGGCAAGCGCGTCTACGTGACGGAAGTCATTGCTGATAACGTTCGTTTCTTGGAATCCGG
TAATCGTGATGGCGGTGGCTCACGTGAAGAGGGAAGCGGCAGTTCAGGCGGCGGAGGCAATAGTGGTCAAGGTGGAAACC
AAGGCGGCTATGGTGGAGGTTCACAAGGTGGAGGCAACCGTTCCGGAGGCACACCAAAGAACGACAATCGTGATCCGTTC
TCAGATGACGGACGCCCGATCGACATATCGGAAGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G9IYI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.091

100

0.591
  ssb Latilactobacillus sakei subsp. sakei 23K

47.727

100

0.477

Multiple sequence alignment