Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NRS07_RS17245 Genome accession   NZ_CP103371
Coordinates   3857944..3859386 (-) Length   480 a.a.
NCBI ID   WP_259209153.1    Uniprot ID   -
Organism   Massilia sp. H6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3852944..3864386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NRS07_RS17235 (NRS07_17235) - 3853285..3854406 (-) 1122 WP_259209148.1 ribonucleotide-diphosphate reductase subunit beta -
  NRS07_RS17240 (NRS07_17240) - 3854495..3857422 (-) 2928 WP_259209151.1 ribonucleoside-diphosphate reductase subunit alpha -
  NRS07_RS17245 (NRS07_17245) pilR 3857944..3859386 (-) 1443 WP_259209153.1 sigma-54 dependent transcriptional regulator Regulator
  NRS07_RS17250 (NRS07_17250) - 3859399..3861114 (-) 1716 WP_259209154.1 PAS domain-containing sensor histidine kinase -
  NRS07_RS17255 (NRS07_17255) - 3861123..3861368 (-) 246 WP_259209158.1 PP0621 family protein -
  NRS07_RS17260 (NRS07_17260) - 3861365..3862168 (-) 804 WP_259209161.1 inner membrane protein YpjD -
  NRS07_RS17265 (NRS07_17265) - 3862264..3863088 (-) 825 WP_259209163.1 ABC transporter ATP-binding protein -
  NRS07_RS17270 (NRS07_17270) - 3863090..3863878 (-) 789 WP_259213354.1 ABC transporter permease -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 51180.92 Da        Isoelectric Point: 4.9724

>NTDB_id=722378 NRS07_RS17245 WP_259209153.1 3857944..3859386(-) (pilR) [Massilia sp. H6]
MTAPRILVVDDEADLRELLEITLLKMGLDVDSAATLRQARALLEERDYALILTDMRLPDGLGLELVREVHASPKATPIAV
ITAYGSAENAVVALKAGAFDYISKPVALDALRVMVRSALRLLEAAPAQPDGVVPGSRMIGNSPAMQSLRVQIGRLARSNA
PISITGESGSGKELAAREIHAQSSRAAKPFVAVNCGAIPETLMEAEFFGYRKGAFTGAAEERDGFFQAANGGTLMLDEVA
DLPLAMQVKLLRAIQERRVRKIGATSEEPVDVRIISATHQDLARCVELGRFRQDLFYRLNVIELSLPPLRERIDDLPPLV
DAVLARLAGPAQAALGPGVLDALRAYSFPGNIRELENVLERALAFANDGVIEVGDLSLKAARPGEAGREPVPAAATAAVA
PPAPAPAPIEAAPAPAGLGPNGLPASLPDYLIQVERDIIGRALQQTQFNRTQAAALLGISVRQLRYQMQKLEISAPEDNA

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=722378 NRS07_RS17245 WP_259209153.1 3857944..3859386(-) (pilR) [Massilia sp. H6]
ATGACCGCACCCCGCATTTTGGTGGTCGACGACGAAGCCGACCTGCGTGAACTGCTCGAGATCACCCTGCTCAAGATGGG
GCTGGACGTCGATAGCGCGGCTACGCTGCGCCAGGCGCGCGCGCTGCTCGAGGAGCGCGACTACGCGCTGATCCTGACCG
ACATGCGCCTGCCCGATGGCCTGGGGCTGGAGCTGGTGCGCGAAGTGCATGCCTCGCCCAAGGCAACGCCGATTGCCGTG
ATCACCGCCTATGGCAGCGCCGAGAACGCGGTGGTCGCGCTCAAGGCGGGGGCCTTCGACTACATTTCCAAGCCGGTGGC
GCTCGATGCGCTGCGCGTGATGGTGCGCTCGGCCCTGCGCCTGCTCGAGGCGGCGCCGGCGCAGCCCGACGGCGTGGTGC
CCGGTTCGCGCATGATCGGCAATTCGCCGGCGATGCAGTCGCTGCGGGTCCAGATCGGCCGGCTGGCGCGCTCGAACGCG
CCGATCTCGATCACCGGCGAGTCGGGCAGCGGCAAGGAGCTCGCCGCCCGTGAAATCCACGCCCAGAGTTCGAGGGCGGC
CAAGCCGTTCGTCGCGGTGAACTGCGGCGCGATTCCCGAAACCCTGATGGAAGCGGAGTTCTTTGGCTATCGCAAGGGTG
CCTTTACCGGCGCGGCCGAGGAACGCGACGGCTTTTTCCAGGCCGCCAATGGCGGCACCCTGATGCTCGACGAGGTGGCC
GACCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGTGCGATCCAGGAGCGGCGGGTGCGCAAGATCGGTGCCACCAGCGA
GGAGCCGGTGGACGTGCGCATCATCAGCGCCACCCACCAGGACCTGGCCCGCTGCGTGGAACTGGGCCGCTTCAGGCAGG
ATCTGTTCTACCGCCTGAACGTGATCGAGCTGTCGCTGCCGCCGCTGCGCGAGCGCATCGATGATTTGCCGCCGCTGGTG
GACGCGGTGCTGGCGCGCCTGGCCGGACCTGCTCAAGCCGCGCTCGGGCCCGGCGTGCTGGACGCGCTGCGCGCCTATTC
CTTCCCCGGCAATATCCGCGAACTCGAGAACGTGCTGGAGCGGGCGCTGGCGTTTGCCAACGACGGCGTGATCGAAGTAG
GGGACTTGTCGCTGAAGGCGGCGCGTCCGGGCGAGGCGGGACGCGAGCCGGTGCCGGCCGCGGCGACTGCGGCAGTAGCA
CCACCGGCGCCGGCGCCAGCGCCGATCGAGGCGGCGCCGGCGCCGGCCGGGCTCGGCCCGAACGGCTTGCCCGCCAGCTT
GCCCGACTACCTGATCCAGGTCGAGCGCGACATCATCGGGCGCGCGCTGCAGCAAACCCAGTTCAACCGGACGCAGGCCG
CGGCGCTGCTCGGGATCAGCGTGCGCCAGCTGCGCTACCAGATGCAGAAGCTGGAGATTTCGGCGCCGGAAGATAACGCT
TGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(138-304)

Bacterial regulatory protein, Fis family (HTH_8)

(433-471)

Response regulator receiver domain (Response_reg)

(6-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

52.708

100

0.527
  pilR Acinetobacter baumannii strain A118

42.251

98.125

0.415