Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NX810_RS17410 Genome accession   NZ_CP103350
Coordinates   3289001..3289645 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM117108     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3284001..3294645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX810_RS17375 (NX810_17375) mrpB 3285193..3285624 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NX810_RS17380 (NX810_17380) mrpC 3285624..3285965 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  NX810_RS17385 (NX810_17385) mrpD 3285958..3287439 (+) 1482 WP_015714622.1 Na+/H+ antiporter subunit D -
  NX810_RS17390 (NX810_17390) mrpE 3287445..3287921 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NX810_RS17395 (NX810_17395) mrpF 3287921..3288205 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NX810_RS17400 (NX810_17400) mnhG 3288189..3288563 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  NX810_RS17405 (NX810_17405) yuxO 3288602..3288982 (-) 381 WP_015714624.1 hotdog fold thioesterase -
  NX810_RS17410 (NX810_17410) comA 3289001..3289645 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NX810_RS17415 (NX810_17415) comP 3289726..3292038 (-) 2313 WP_120363507.1 histidine kinase Regulator
  NX810_RS17420 (NX810_17420) comX 3292054..3292275 (-) 222 WP_014480704.1 competence pheromone ComX -
  NX810_RS17425 (NX810_17425) - 3292277..3293140 (-) 864 WP_032722437.1 polyprenyl synthetase family protein -
  NX810_RS17430 (NX810_17430) degQ 3293325..3293465 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NX810_RS17435 (NX810_17435) - 3293687..3293812 (+) 126 WP_003228793.1 hypothetical protein -
  NX810_RS17440 (NX810_17440) - 3293926..3294294 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=722161 NX810_RS17410 WP_003220716.1 3289001..3289645(-) (comA) [Bacillus subtilis strain SRCM117108]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=722161 NX810_RS17410 WP_003220716.1 3289001..3289645(-) (comA) [Bacillus subtilis strain SRCM117108]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1