Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NXS96_RS13365 Genome accession   NZ_CP103066
Coordinates   2552279..2552614 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain 0137     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547279..2557614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NXS96_RS13345 (NXS96_13345) gcvT 2547871..2548959 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  NXS96_RS13350 (NXS96_13350) hepAA 2549401..2551074 (+) 1674 WP_004398544.1 DEAD/DEAH box helicase -
  NXS96_RS13355 (NXS96_13355) yqhG 2551095..2551889 (+) 795 WP_003230200.1 YqhG family protein -
  NXS96_RS13360 (NXS96_13360) sinI 2552072..2552245 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  NXS96_RS13365 (NXS96_13365) sinR 2552279..2552614 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NXS96_RS13370 (NXS96_13370) tasA 2552707..2553492 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  NXS96_RS13375 (NXS96_13375) sipW 2553556..2554128 (-) 573 WP_003246088.1 signal peptidase I SipW -
  NXS96_RS13380 (NXS96_13380) tapA 2554112..2554873 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  NXS96_RS13385 (NXS96_13385) yqzG 2555145..2555471 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NXS96_RS13390 (NXS96_13390) spoIITA 2555513..2555692 (-) 180 WP_003230176.1 YqzE family protein -
  NXS96_RS13395 (NXS96_13395) comGG 2555763..2556137 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  NXS96_RS13400 (NXS96_13400) comGF 2556138..2556521 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  NXS96_RS13405 (NXS96_13405) comGE 2556547..2556894 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  NXS96_RS13410 (NXS96_13410) comGD 2556878..2557309 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  NXS96_RS13415 (NXS96_13415) comGC 2557299..2557595 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=721341 NXS96_RS13365 WP_003226345.1 2552279..2552614(+) (sinR) [Bacillus subtilis strain 0137]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=721341 NXS96_RS13365 WP_003226345.1 2552279..2552614(+) (sinR) [Bacillus subtilis strain 0137]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1