Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NF399_RS03790 Genome accession   NZ_CP103049
Coordinates   786620..787015 (+) Length   131 a.a.
NCBI ID   WP_016898665.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. capitis strain DSM 20326     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 781620..792015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF399_RS03760 atpD 781838..783250 (+) 1413 WP_002435865.1 F0F1 ATP synthase subunit beta -
  NF399_RS03765 - 783270..783674 (+) 405 WP_002453706.1 F0F1 ATP synthase subunit epsilon -
  NF399_RS03770 - 783815..784048 (+) 234 WP_002453705.1 DUF1146 family protein -
  NF399_RS03775 murA 784158..785423 (+) 1266 WP_002453704.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NF399_RS03780 fabZ 785468..785905 (+) 438 WP_002435844.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NF399_RS03785 - 785986..786429 (-) 444 WP_002453703.1 YwpF-like family protein -
  NF399_RS03790 ssb 786620..787015 (+) 396 WP_016898665.1 single-stranded DNA-binding protein Machinery gene
  NF399_RS03795 - 787410..788135 (+) 726 WP_002453702.1 transglycosylase family protein -
  NF399_RS03800 tenA 788431..789126 (+) 696 WP_002453701.1 thiaminase II -
  NF399_RS03805 thiD 789113..789934 (+) 822 WP_016898666.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NF399_RS03810 thiM 789927..790715 (+) 789 WP_002435520.1 hydroxyethylthiazole kinase -
  NF399_RS03815 thiE 790722..791360 (+) 639 WP_002453698.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15172.09 Da        Isoelectric Point: 5.7115

>NTDB_id=721158 NF399_RS03790 WP_016898665.1 786620..787015(+) (ssb) [Staphylococcus capitis subsp. capitis strain DSM 20326]
MLNKIVIVGRLTKDAQIYEKEDSKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQKHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=721158 NF399_RS03790 WP_016898665.1 786620..787015(+) (ssb) [Staphylococcus capitis subsp. capitis strain DSM 20326]
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAGGATAGTAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAAAGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

100

0.756
  ssb Staphylococcus aureus MW2

74.809

100

0.748