Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NW945_RS02535 Genome accession   NZ_CP102974
Coordinates   536826..537395 (+) Length   189 a.a.
NCBI ID   WP_258414528.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 01-RR-86     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 531826..542395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NW945_RS02510 (NW945_02510) cysE 533039..533686 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  NW945_RS02515 (NW945_02515) cysS 533670..535070 (+) 1401 WP_000631973.1 cysteine--tRNA ligase -
  NW945_RS02520 (NW945_02520) - 535063..535467 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  NW945_RS02525 (NW945_02525) rlmB 535475..536221 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NW945_RS02530 (NW945_02530) - 536221..536745 (+) 525 WP_000664738.1 NYN domain-containing protein -
  NW945_RS02535 (NW945_02535) sigH 536826..537395 (+) 570 WP_258414528.1 RNA polymerase sigma factor Regulator
  NW945_RS02540 (NW945_02540) rpmG 537510..537653 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  NW945_RS02545 (NW945_02545) secE 537709..537891 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  NW945_RS02550 (NW945_02550) nusG 537904..538452 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NW945_RS02555 (NW945_02555) rplK 538633..539055 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  NW945_RS02560 (NW945_02560) rplA 539263..539955 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  NW945_RS02565 (NW945_02565) rplJ 540227..540727 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  NW945_RS02570 (NW945_02570) rplL 540770..541138 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  NW945_RS02575 (NW945_02575) - 541313..541921 (+) 609 WP_258414529.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23040.92 Da        Isoelectric Point: 9.3965

>NTDB_id=720941 NW945_RS02535 WP_258414528.1 536826..537395(+) (sigH) [Staphylococcus aureus strain 01-RR-86]
MKYDLPTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=720941 NW945_RS02535 WP_258414528.1 536826..537395(+) (sigH) [Staphylococcus aureus strain 01-RR-86]
TTGAAATATGATTTGCCAACGCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGATCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATAAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

98.413

100

0.984
  sigH Staphylococcus aureus MW2

98.413

100

0.984