Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   PUN50_RS11630 Genome accession   NZ_CP117988
Coordinates   2523342..2523956 (-) Length   204 a.a.
NCBI ID   WP_005532773.1    Uniprot ID   -
Organism   Vibrio campbellii strain 20220413_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2518342..2528956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PUN50_RS11605 (PUN50_11605) ybgE 2518699..2519001 (-) 303 WP_005426209.1 cyd operon protein YbgE -
  PUN50_RS11610 (PUN50_11610) cydX 2518994..2519101 (-) 108 WP_000270284.1 cytochrome bd-I oxidase subunit CydX -
  PUN50_RS11615 (PUN50_11615) cydB 2519114..2520250 (-) 1137 WP_038889166.1 cytochrome d ubiquinol oxidase subunit II -
  PUN50_RS11620 (PUN50_11620) cydA 2520268..2521854 (-) 1587 WP_038889167.1 cytochrome ubiquinol oxidase subunit I -
  PUN50_RS11625 (PUN50_11625) ruvB 2522316..2523320 (-) 1005 WP_005426235.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  PUN50_RS11630 (PUN50_11630) ruvA 2523342..2523956 (-) 615 WP_005532773.1 Holliday junction branch migration protein RuvA Machinery gene
  PUN50_RS11635 (PUN50_11635) - 2524035..2525486 (-) 1452 WP_274290431.1 methyl-accepting chemotaxis protein -
  PUN50_RS11640 (PUN50_11640) ruvC 2525609..2526130 (-) 522 WP_005426231.1 crossover junction endodeoxyribonuclease RuvC -
  PUN50_RS11645 (PUN50_11645) aspS 2526231..2528009 (-) 1779 WP_038889171.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22094.54 Da        Isoelectric Point: 4.9396

>NTDB_id=720205 PUN50_RS11630 WP_005532773.1 2523342..2523956(-) (ruvA) [Vibrio campbellii strain 20220413_1]
MIGRLRGTLLEKQPPEVLIEVNGIGYEVQMPMSCFYELPNVGEEAIIYTHFVVREDAQLLYGFNTVKERALFREVIKANG
VGPKLGLGILSGMTASQFVSCVEREDISTLVKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPFTDAAPADSGSAASSNA
EEEAISALLALGYKPTQASKVVSQIAKPDMTSEQLIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=720205 PUN50_RS11630 WP_005532773.1 2523342..2523956(-) (ruvA) [Vibrio campbellii strain 20220413_1]
GTGATTGGACGTCTTCGCGGCACTCTGCTTGAAAAGCAACCACCTGAAGTTTTAATTGAAGTTAATGGCATTGGTTATGA
AGTTCAGATGCCAATGAGCTGTTTCTACGAACTGCCAAACGTCGGTGAAGAAGCCATTATTTATACTCACTTTGTTGTGC
GTGAAGACGCGCAATTGCTTTACGGTTTCAACACAGTCAAAGAACGTGCGCTTTTCCGTGAAGTGATCAAAGCGAACGGT
GTTGGTCCTAAGCTAGGTCTGGGTATCCTTTCAGGTATGACAGCGAGCCAATTCGTTTCTTGCGTTGAGCGTGAAGACAT
TTCAACGCTTGTGAAGCTGCCTGGTGTTGGTAAGAAGACAGCTGAACGCCTAGTCGTTGAAATGAAAGACCGCCTGAAAG
GGTGGGGCGCTGGCGATCTATTTACTCCGTTTACTGATGCAGCACCTGCGGACTCTGGTTCTGCGGCTTCTAGCAACGCA
GAAGAAGAGGCAATCAGTGCGCTTCTAGCTCTAGGCTACAAGCCAACTCAAGCGTCGAAAGTGGTTTCTCAGATCGCTAA
ACCGGATATGACCAGTGAGCAACTGATCCGTGAAGCACTAAAATCAATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(160-203)

Helix-hairpin-helix domain (HHH_5)

(72-130)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

36.408

100

0.368
  ruvA Streptococcus pneumoniae D39

36.408

100

0.368
  ruvA Streptococcus pneumoniae TIGR4

36.408

100

0.368