Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   NU955_RS08290 Genome accession   NZ_CP102762
Coordinates   1723815..1724516 (+) Length   233 a.a.
NCBI ID   WP_004747380.1    Uniprot ID   A0A9E9PDK8
Organism   Acinetobacter baumannii strain AOR07-BL     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1718815..1729516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NU955_RS08255 kdsB 1719338..1720099 (+) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NU955_RS08260 - 1720111..1721091 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  NU955_RS08265 - 1721103..1721444 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  NU955_RS08270 - 1721462..1722235 (+) 774 WP_000497302.1 TatD family hydrolase -
  NU955_RS08275 - 1722273..1722881 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  NU955_RS08280 - 1722891..1723445 (+) 555 WP_005128793.1 type II secretion system protein -
  NU955_RS08285 xcpV 1723435..1723815 (+) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  NU955_RS08290 xcpW 1723815..1724516 (+) 702 WP_004747380.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NU955_RS08295 gspK 1724516..1725475 (+) 960 WP_005128789.1 type II secretion system minor pseudopilin GspK -
  NU955_RS08300 - 1725705..1726301 (+) 597 WP_000908452.1 6-pyruvoyl trahydropterin synthase family protein -
  NU955_RS08305 ung 1726352..1727065 (+) 714 WP_001177528.1 uracil-DNA glycosylase -
  NU955_RS08310 - 1727062..1728186 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  NU955_RS08315 tadA 1728193..1728696 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  NU955_RS08320 - 1728766..1729209 (+) 444 WP_001246675.1 SRPBCC family protein -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26629.59 Da        Isoelectric Point: 9.5501

>NTDB_id=718853 NU955_RS08290 WP_004747380.1 1723815..1724516(+) (xcpW) [Acinetobacter baumannii strain AOR07-BL]
MIKNKYIHIRSFASRLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=718853 NU955_RS08290 WP_004747380.1 1723815..1724516(+) (xcpW) [Acinetobacter baumannii strain AOR07-BL]
ATGATAAAAAATAAATATATTCACATCCGCAGCTTTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

99.571

100

0.996